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13-2918-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 27646083 [Map]; Strand: c
      • AT1G73530.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: -689; Region: promoter
      • AT1G73540.1 - [+] show detail - nudix hydrolase homolog 21
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 13-2918-1 - 5-prime edge 
    AAGCTGCTTT AAGAGAGACG ATTGAAGAAG CTGGTGTTAC GGGTCAGCTT 
    GAAGAATCAC TTGGGAAATG GCAATACAAA AGCAAAAGAC ATACTATGAT 
    TCATGATGGT CACATGTTTC CTTTGCTTGT TAGTCAGCAG TTTGAGATAT 
    GGCCTGAATC TGAATT

AT1G73530.1

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G54580.1); Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G73540.1

Model type
Protein coding
Short Description
nudix hydrolase homolog 21
Computational Description
nudix hydrolase homolog 21 (NUDT21); FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase, conserved site (InterPro:IPR020084), NUDIX hydrolase domain (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 4 (TAIR:AT1G18300.1); Has 1276 Blast hits to 1275 proteins in 388 species: Archae - 3; Bacteria - 524; Metazoa - 249; Fungi - 131; Plants - 237; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).
Link
InterPro Scan - TAIR