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Mutant Lines
13-2923-1

13-2923-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 506519 [Map]; Strand: c
- AT1G02460.1 - [+] show detail - Pectin lyase-like superfamily protein
  Distance: 0; Region: exon2 (CDS)

NAGANGAGCG TCNGGTACNA NNANANNNGG ATGGATTCNN GCCGGGGGAC 
TACAGACNCA TTGCCAAANA AGACANAAAT GGGCGTNGAG CAAGNTGCAA 
GCGCAGTTGG GAGNGGACCA ANANTAGAGC NGNANNGAGG CTNGAGNCAC 
GTGAANCGNN NACNNGAAGG ANGANGGGNA NNNGNNGCAN TGANAAACGC 
CNCGNANGNG GCGAGAGATA CCNCANNCNC TNGAGCAAGG AGANNANTCN 
NCTNTNAANN ANGCGNCNNT AANAACNCCA TAGGCATCAN NGATTNAAGA 
NNCTATGGTN ANGAANNTTA ATNAGNNNNA GNANNCTGNA NANTATNAAA 
NGGAGAGCAN CATANNNNAN NNNCNGNACT AATNAGTNNG CTATATTTCT 
ATACAGAGTG TCAACAAATC ANCAATTGTT ACCGGNCCTT GCGATAGCCC 
CATNGNNAGT NCGACGTAAC CTTNATAGAC CAATTTAAAA AATNTCTTAT 
TAATAAACCC GGGAAAANAA TTNATTGAAT TACATGCAGG CTNTGAGGGN 
NNTTATGAGC NCNAATCTNA GGGTGGNNGG NTNCNGATNA AAAACNGGCN 
CGCNGTCNNN TTTCNGATNA NACGGANGNN NNGGAGNCNC GGNNGAAGNN 
CCGNNNGNNN GNNGNNCCAN NCGNNNAGNN CNNGNNNNAC GGGNAANAAN 
NANCCNNGNN NNNNNNNCNN NCNCGNGCGN GNCGNNNNNG NNGCGGNNAC 
CNNNCCGNGG GGGGGCGCGN NGNGNCGNAN CN

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 506584 [Map]; Strand: c
  - AT1G02460.1 - [+] show detail - Pectin lyase-like superfamily protein
    Distance: 0; Region: intron1 (CDS)
Flanking Genome Sequence: 13-2923-1 - 3-prime edge
```
CACCTAGCAA TAATAATAAT AAAAAATCAA ATTTACAAAC AAAAAATTTG 
ACCCAATTAT CTAAATGTTG AAAATTAAGC T
```

AT1G02460.1

Model type: Protein coding
Short Description: Pectin lyase-like superfamily protein
Computational Description: Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: stem, root, stamen, seed; EXPRESSED DURING: 4 anthesis, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT4G01890.1); Has 5413 Blast hits to 5130 proteins in 651 species: Archae - 6; Bacteria - 1539; Metazoa - 261; Fungi - 1343; Plants - 1850; Viruses - 100; Other Eukaryotes - 314 (source: NCBI BLink).
Link: InterPro Scan - TAIR