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13-2930-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 13590455 [Map]; Strand: w
      • AT3G33055.1 - [+] show detail - transposable element gene
        Distance: 6481; Region: intergenic
      • AT3G33058.1 - [+] show detail - transposable element gene
        Distance: -11345; Region: intergenic
    2. Chromosome: 3; Position: 13591167 [Map]; Strand: w
      • AT3G33055.1 - [+] show detail - transposable element gene
        Distance: 7193; Region: intergenic
      • AT3G33058.1 - [+] show detail - transposable element gene
        Distance: -10633; Region: intergenic
    3. Chromosome: 3; Position: 13592413 [Map]; Strand: w
      • AT3G33055.1 - [+] show detail - transposable element gene
        Distance: 8439; Region: intergenic
      • AT3G33058.1 - [+] show detail - transposable element gene
        Distance: -9387; Region: intergenic
    Flanking Genome Sequence: 13-2930-1 - 3-prime edge 
    CATGACATCA AGTCATATTT GACTCCAAAA CACTAACCAA CCTTCTTCTT 
    GCATCTCAAA GCTACCANNN CGGGCCGTNA

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11705290 [Map]; Strand: c
      • AT5G31770.1 - [+] show detail - transposable element gene
        Distance: 3528; Region: intergenic
      • AT5G31787.1 - [+] show detail - transposable element gene
        Distance: -7823; Region: intergenic
    Flanking Genome Sequence: 13-2930-1 - 5-prime edge 
    ATGTCATGTG TATGATTGAG TATAAGAACT TAAACCGTAT CTCGATCTTA 
    TAAGCCTAAG TAGTGTTTCC TTGTTAGAAC ATACAAAGCC AAAGACTCAT 
    ACGGACTTTG GCTACACCAT GAAAGCT

AT3G33055.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 3.2e-282 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT3G33058.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 2.4e-112 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G31770.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 3.7e-53 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G31787.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G32312.1)
Link
InterPro Scan - TAIR