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13-2955-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3660179 [Map]; Strand: w
      • AT1G10950.1 - [+] show detail - transmembrane nine 1
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 13-2955-1 - 5-prime edge 
    NNTGGAACCA TCATNTGTGT GAAGACTTTA ACTCCTGATT TTTGAAATGA 
    TATTGAACGT AGCCTTTATC AGTATCTGTC TGTCTACGTT TGACATTTTG 
    TTCTGTTCTC TCTAATGGAA TTTTGGTTCT TACTCTCTCT TACTAGTTAA 
    TCCCATAAAC TTTTACATTT CTGNGCTTTT CTGTCAAGTC AATTTTTTTT 
    GCCTTCACCT TTTTCAGTAT CAAGCCGAGG AGCAGGTCAC CCTATGGGTA 
    AACAAAGNNG GCCCATNTAA CAATCCACAA NAAANATACA ACTATTACAG 
    TCTTCCATTT TGCCGCCCCT CTGGAAACAA TGTTCACAAA NGGGGNGGNN 
    TNGGTGAANT TCTAGGTGGA AATGAGCTGA TTGACAGTGA GATTGCAAAN 
    AAAATTCATA ANTCCGTTNA ATTCTTNTAC AANANAAANN CCCGGGNCGG 
    GGNCAAACNN GCCCCCNANN NNNGNNNNNN CNGNGGGNNN NNNNCCNNCC 
    CNACCCAAAG CCNNNNNNNG NGGGGGGGGG NNAAAGANAA AANNNNNCCC 
    NCCNCANCCG GC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3660063 [Map]; Strand: w
      • AT1G10950.1 - [+] show detail - transmembrane nine 1
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 13-2955-1 - 3-prime edge 
    GTTCCATAGA AATAATGGCT CTTGAATAAT GCTACCAGAT TGCTCTTGAA 
    TAATGCATAA CCCGCCTTTA TCTATCATCT TTCACGCAGA AAATATATAG 
    TTGGAATCGA CTTTAAATGT CACACTACTT GCGAGCGTAA GAAGGCAGAG 
    GAGCAAAAGC ATTAAAGCTA GATCTCATGA TCTCCAATAT CACAAAAGGC 
    AATAACAATT TTGAGCTAAA ACTGACCATC AGCAAAAGAA GCCATGTGTG 
    ACACTTTCAG TATCACATTT TAGATACCAA TTGAAAAAAA TCATCAACCC 
    GACCTCGGAA CTATAAGATC TACATCTCGA AGATGCTAAT ACATTAAATG 
    CCACTCAATT ACAACACAAC TCAGTGTTGA TCCAAGTATT TGAACATCAA 
    ACAGGCTACC ACGTGCAGAA ATCAACGAGA ATCTCAAACC AACATCAAAA 
    TTTCTTATTA AAATCGAGAT TGTGAAAAGC CTAAATCACA ATGAATAGAC 
    AAAATACGCC TAGACTTGCA ACGAAAAGAT ACGCCTAAAT CACAATGAAT 
    AGAAGCTCGA GGATC

AT1G10950.1

Model type
Protein coding
Short Description
transmembrane nine 1
Curator Summary
Encodes an Arabidopsis Transmembrane nine (TMN) protein. Transmembrane nine (TM9) proteins are localized in the secretory pathway of eukaryotic cells and are involved in cell adhesion and phagocytosis.
Computational Description
transmembrane nine 1 (TMN1); LOCATED IN: integral to membrane, Golgi apparatus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: Endomembrane protein 70 protein family (TAIR:AT5G37310.1); Has 1611 Blast hits to 1538 proteins in 326 species: Archae - 0; Bacteria - 16; Metazoa - 610; Fungi - 273; Plants - 454; Viruses - 0; Other Eukaryotes - 258 (source: NCBI BLink).
Link
InterPro Scan - TAIR