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13-2983-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1564328 [Map]; Strand: w
      • AT5G05270.1 - [+] show detail - Chalcone-flavanone isomerase family protein
        Distance: 0; Region: exon4 (CDS)
      • AT5G05270.2 - [+] show detail - Chalcone-flavanone isomerase family protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 13-2983-1 - 5-prime edge 
    CGTGATAAAC TAACAAACTC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTN CTGAGGNCNT GACNAGGAAG AAGAAGAAAC TGAGCTCGAG 
    AAGGTCGTTG GCTTTTTCCA CGTCCAAGNA CTTCAAAGCT AACTCCGTTA 
    TCACTTACCA TTTCTCAGCC AAAGATGGCA TTTGCGAGGT AAGAAAATAT 
    CAAATTTCAT ATATTTTTAG AAAGAAAGTA TGTTTAGTTA TCCATAAACA 
    TAAGCATCAA ATTCTTGTGG AACAGAGGAA CTCTGTTTTT TGCGTGATAC 
    AGTATAACTT ATACTAATGA GAATTTGTTT GAAAGAGTAG ATGTTTTAGT 
    TTCTTATTGC TAGCGTACAA AACAATCAAT GTCCTAAAAT AATTCTTTAT 
    TGATTGGTGG AAGATCGGGT TTGAGACGGA AGGTAAAGAA GAGGAGAAAC 
    TGAAGGTGGA GAATGCGAAT GTGGTGGGAA TGATGCAGAG ATGGTATTTG 
    TCCGGAAGTC GTGGAGTCTC ACCGTCGACT ATTGTCTCCA TCGCTGATTC 
    AATCTCCGCA GTTTTAACCT AAGAACCATG GCCCCCTTAC ATAAAAATTT 
    GTATGTGTGT GTGTTTTATG TAGNATTTTT TTTTTNCCTT TNGNNAAAAA 
    NCCNGCTTTN GNTTAAAAAA ACTTTTTCTT TGGNNNTTTT NNTTTGNCCC 
    CANNATTTTG GGNNNNGNCT NANCCNNNNN NNAAANAAGN TCNGNCCGGG 
    GGCCGNNNNA CAAANNNNNN CCCNANAAN

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1557273 [Map]; Strand: c
      • AT5G05240.1 - [+] show detail - Uncharacterised conserved protein (UCP030365)
        Distance: -717; Region: promoter
      • AT5G05250.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-2983-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG GTTTGTCAAA 
    CCGGCCCACA CTCAACTCCT CTCCCTTGCA CCACCAACCC CCACGCACGT 
    GTGCCGTCTC CACCGTCAAC ACCACAGCCA CAACTCTCCT CCGCCGCTCC 
    TAACTGCTCA ACGAACACTA TCCCTTCCGG CATCTCCGCC TCTCCTCTCT 
    CCCATCTCCC CTTCACCGCC GCCCATTCCT CTGCTTTCAT CACAACTACC 
    GTTCCCTCCT CCTTATCTCC GGTGTACAAA TGGACTAACA ACGGCGCTTC 
    ACTTAAATTC TTAACGATCT CCGTCACCGA TTCCTTCATC CACCTGTCTA 
    GCTTCTCACG CTCCGCTTCC ACCTCCCAAC GATCTCGTCT GCTTCTCCCT 
    CCGCTTCTTC GTCCACCTCT CTGTTTCTCT ATCTCAGTCA CAGCCTCCCC 
    TATCGACGCC GAGATTGTTC CGATGCTAGA TCGTCGATTA CCGCCTAGAT 
    TAATCGGAAA CGACGATGAA ATCAATCTCG CATTATGATC GGATC

AT5G05240.1

Model type
Protein coding
Short Description
Uncharacterised conserved protein (UCP030365)
Computational Description
Uncharacterised conserved protein (UCP030365); CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP030365 (InterPro:IPR016953); BEST Arabidopsis thaliana protein match is: Uncharacterised conserved protein (UCP030365) (TAIR:AT2G40630.1); Has 61 Blast hits to 59 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G05250.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56360.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G05270.1

Model type
Protein coding
Short Description
Chalcone-flavanone isomerase family protein
Computational Description
Chalcone-flavanone isomerase family protein; FUNCTIONS IN: intramolecular lyase activity, chalcone isomerase activity; INVOLVED IN: response to karrikin; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chalcone isomerase, subgroup (InterPro:IPR003466), Chalcone isomerase, 3-layer sandwich (InterPro:IPR016088), Chalcone isomerase (InterPro:IPR016087); BEST Arabidopsis thaliana protein match is: Chalcone-flavanone isomerase family protein (TAIR:AT3G55120.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G05270.2

Model type
Protein coding
Short Description
Chalcone-flavanone isomerase family protein
Computational Description
Chalcone-flavanone isomerase family protein; FUNCTIONS IN: intramolecular lyase activity, chalcone isomerase activity; INVOLVED IN: response to karrikin; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chalcone isomerase, subgroup (InterPro:IPR003466), Chalcone isomerase, 3-layer sandwich (InterPro:IPR016088), Chalcone isomerase (InterPro:IPR016087); BEST Arabidopsis thaliana protein match is: Chalcone-flavanone isomerase family protein (TAIR:AT3G55120.1); Has 361 Blast hits to 360 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 358; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR