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13-2985-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 6170394 [Map]; Strand: c
      • AT3G18035.1 - [+] show detail - winged-helix DNA-binding transcription factor family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 13-2985-1 - 3-prime edge 
    TNTTAAANCA TGANNNAGGT ATNATATTCA ANCGTNACNG ACCGNNTTNA 
    TCCNTANGAN NNNCTGNGAN TCTNNTNGGC NTCATAATAA TGCCNACTGN 
    TNGCNCCACC ANTATTNGGN GGTNAGTCCA CGTCCACGCT TTNATCCCTG 
    NCGCAACCGN TGNCACATTT TNACCACCTA CTGGAGCAAC ACTTAACAAT 
    ACTAGCTAGG GTCAACAACT NTCCTANGCC TTCCTCTGCG TCTAGCACCA 
    TTAGCAACAT AAGGATACAC ANAGGCANTA GAAGAAACGG ATTTGGGCTT 
    CCTNTGTCTC CCAGCAGNTC GACAGACCCG GNGGNNTACC TCTACNTTTC 
    ATAATNNCAN CCATAACCNA AGCT

AT3G18035.1

Model type
Protein coding
Short Description
winged-helix DNA-binding transcription factor family protein
Curator Summary
A linker histone like protein
Computational Description
HON4; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), A.T hook-like (InterPro:IPR020478), AT hook, DNA-binding motif (InterPro:IPR017956), Histone H1/H5 (InterPro:IPR005818); BEST Arabidopsis thaliana protein match is: high mobility group A5 (TAIR:AT1G48620.1); Has 2301 Blast hits to 2184 proteins in 377 species: Archae - 0; Bacteria - 351; Metazoa - 868; Fungi - 344; Plants - 528; Viruses - 17; Other Eukaryotes - 193 (source: NCBI BLink).
Link
InterPro Scan - TAIR