Home
Mutant Lines
13-2990-1

13-2990-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 1873654 [Map]; Strand: w
- AT1G06150.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
  Distance: 0; Region: exon1 (5UTR)
- AT1G06149.1 - [+] show detail - conserved peptide upstream open reading frame 8
  Distance: 0; Region: exon1 (5UTR)
- AT1G06150.2 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
  Distance: 0; Region: exon1 (5UTR)

CGNGAAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
TCCCATCCTA CTTTCATCCC TNGGTGAAAG AGAGATGAAC ACTTTGAGTN 
ACANCANCAA CGTGACTACG AGAGAGAGAN AGACACCCAC NCGNGCCCTA 
NAGACATCTG TGTTTTAAAG GGGGGGCTGT TGAAGAAAAT TCAGGGCTCA 
TTTTAGCAAC GGTGGTAATA TTATCAGAGC TATCGTGCGC TGGCTAGGTG 
CGCATTTTAG CAACCCTAGG CCTAGGGTAG TAGTGTGGGG GGTGGATTTT 
AAGGCATGGG ATTAATAATG TGGAAAAAAC ATTCGAGTGA TATGATCTCT 
CTAATGGCCA GCAAAATGAT TCACCAAGTG AAAATGTGAA ATTTTGTTCC 
TAGTGCACTT TATTTTACTT TTCTTCATCA TACAAATTAC ACGANGTGTN 
GTACTTGNAN TTCTTTNAAC CATACAANTA ACTTTNTTCT TNGAANNGGN 
GNTNGATAGA ACANAANAAN NACGCGTGNA TNNGCCGATG CGATCNTNNT 
CATNGANCNN NNCCNGNNNN GTNGCATAAA TNTGNTCTNC AACCANTNNG 
TTTNTNNTNN NGGGGGANCN AAAACNATTN NGNNGNANCN NTCNNNGGNN 
CGGNATCNCC CCGGAACNTC NACNGGGACG TGNANANGTT NTNTTTNTNA 
NCNNCNNAAA NGCNAATNTN TTTTCCAGGT ATNGATATTT TCCNTNNCAN 
GTTTNCCCCG NNNNAANAAA ANNAATGNNN NAGCCCNANG CGNGNTACNC 
ACCAGAACNN NNAN

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 1873610 [Map]; Strand: w
  - AT1G06150.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Distance: 0; Region: exon1 (5UTR)
  - AT1G06149.1 - [+] show detail - conserved peptide upstream open reading frame 8
    Distance: 0; Region: exon1 (5UTR)
  - AT1G06150.2 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Distance: 0; Region: exon1 (5UTR)
Flanking Genome Sequence: 13-2990-1 - 3-prime edge
```
ATTTCACCGG TGGATTTCTC GACAAAGATT CTAACTTTGA GAGAGATTTT 
TCGTTTCTAG ATGCAGATTC AGAGCGTATC ATCTCTCGAG AAAGGATCAA 
TGTCTCATGA AATAAGCTAG ACTCTGTTTC TGTTTTCTTC TTCTTCGATC 
TCAATTTCTT CTTCTTCGAG CTAGGGGTTG TTTATGTTTG GGAAAGGAAT 
GGGCACTAGG CAGTATTCAC TGGGAGAAGT AGGGCCACCA ATAAATCCGA 
GAGCTGGATT GCGAAGGGAA CAAGCTGGTA GAGGTTCATA CAGAGGTAGT 
TAGTAGATTC GTAGCTCATC TGTAGGCAAA AAGGGTTTCC TTTTAGGTGG 
CAAGACTGTT TATTTTCAGA CACAGAGACT GATTAAGAAT T
```

AT1G06149.1

Model type: Protein coding
Short Description: conserved peptide upstream open reading frame 8
Curator Summary: Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF8 represents a conserved upstream opening reading frame relative to major ORF AT1G06150.1
Computational Description: conserved peptide upstream open reading frame 8 (CPuORF8); BEST Arabidopsis thaliana protein match is: conserved peptide upstream open reading frame 7 (TAIR:AT2G31280.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G06150.1

Model type: Protein coding
Short Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description: EMBRYO DEFECTIVE 1444 (EMB1444); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: conserved peptide upstream open reading frame 7 (TAIR:AT2G31280.1); Has 563 Blast hits to 411 proteins in 68 species: Archae - 0; Bacteria - 54; Metazoa - 32; Fungi - 13; Plants - 398; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G06150.2

Model type: Protein coding
Short Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: conserved peptide upstream open reading frame 7 (TAIR:AT2G31280.1).
Link: InterPro Scan - TAIR