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13-3002-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 25242975 [Map]; Strand: c
      • AT1G67370.1 - [+] show detail - DNA-binding HORMA family protein
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: 13-3002-1 - 5-prime edge 
    NGCCTATGGG NGCTNNCAAN CTACGATCNC ACGANAGGAN AGGANACAGG 
    GCCGGNNATG CTAATGACTG CNGGCNTTAA TCGCTTAGTT TCAATTGTGT 
    ACTCGTTTAT CTTTGATGAT TTTGTTTCTT AATATGGAAT CTAGGAGTCT 
    ACGATGCGCT TCAGAGGAAA TATTTGAAGA CGCTCATGTT CAGCATATGT 
    GAAACTGTTG ATGGTCCGAC GATTGAGGAA TACTCATGTA AGTTCTGGCG 
    AATGATTGAT TAGCTTGATA AAAATGTGTT CGCCGGTGGG TGATTTGATT 
    AATTGATGCC TCATCCCTCC CTGTTTAATT GGTGTATGCT TTGATGATTG 
    TGCTTTTTTG CATAATCGCT TNATGCTAAA ATTCAATGCT CTATATATAT 
    GTAACATCCA TTATTGATTG ATGAAGGGTC TGTGTTATTG CANTTTCTTT 
    CAGCTTTTCN GATTCTGACA GGACAAGANG NCATGATNAA TATCNATNAN 
    TACTGGAAAT AAGACAAATG GAGGAATATT TTAACTCNAN TGCTGACATT 
    ACCCCCAACT CAAANGAAAG CGCCCGNGNN GAGATNANCC TNNACTACCT 
    CNGAGNNAGA AGGCCTATAN TTTATNTTCC GNACANAGGC GTTCNTAATT 
    TNNNCANGAG TTGTGTNCGT ACNNTAGGGA GNNNNANATG GNAAAAATGG 
    NTNNNGNNAC CNNNCCCCCC TGATNACGAC NNCTCGCCAA AN

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 25243088 [Map]; Strand: c
      • AT1G67370.1 - [+] show detail - DNA-binding HORMA family protein
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 13-3002-1 - 3-prime edge 
    CATAGGCATT AGCTTCTTAN TCTTCATATC TACAGAAGCA TCCACCAAAG 
    ATTAGTTTCA ATATTTACCG AAATCGAAAA TTTAACTTGA TTTCTTTAGA 
    TCCCAGAGCC AAAGAGCTCT AGAAACTTCC AGATTAGCAT CTCACCTAAA 
    GCAGGAACCG ATTTATCGTT GAAATACTTC TCAGGAAAGA GTCCTCTGAT 
    GTAACTTATG TTGAAGATAG CAATACGAAG CAAATTTCTA GTCTATTTCA 
    ACAAAACGAA AACCAAAACA AAGACGTCAG TGTAAACGAG CTAAAAACTC 
    CAGCTGATTA ACGCGTAACA AACATAGAAA CTGTTCACGA TTCTTCAGAT 
    TAAGCGAAAA ACTAAGTATA AGAGAACGAG ATCTGAAATC CAGATCAATA 
    TCTACGAAAA TCACCAGGAA GGAGCTAGAA ATTTCACGAA TCGTTAAGAA 
    ACAAAAACTC AAAAGCTCGA TGATCGGCGT AGCTTACCAG AAGAAGCGAG 
    TCCTGCTCAG TGATCTCTGC TTCCTTCAGC TTCTGAGCCA TCACCTGGAG 
    GTAAGAAACA AAACGAAACG CTAAAATCAG ACTGAGAGAA CTTGAACAGA 
    GCGAAAATTT CATAGACTAA GATGAAGAAC GAGACGGAGA GGAGAAAATT 
    GATGATCGGC GATTTCTGCT CTCACCATTT TTGCAGAAAG TGTGAAACGA 
    ATAACGAGAT TCGTCGTCGG GAGGAATT

AT1G67370.1

Model type
Protein coding
Short Description
DNA-binding HORMA family protein
Curator Summary
meiotic asynaptic mutant 1 (ASY1). ASY1 protein is initially distributed as numerous foci throughout the chromatin. During early G2, the foci are juxtaposed to the nascent chromosome axes to form a continuous axis associated signal.
Computational Description
ASYNAPTIC 1 (ASY1); CONTAINS InterPro DOMAIN/s: SWIRM (InterPro:IPR007526), DNA-binding HORMA (InterPro:IPR003511); BEST Arabidopsis thaliana protein match is: DNA-binding HORMA family protein (TAIR:AT4G32200.1); Has 527 Blast hits to 490 proteins in 159 species: Archae - 0; Bacteria - 18; Metazoa - 158; Fungi - 114; Plants - 58; Viruses - 21; Other Eukaryotes - 158 (source: NCBI BLink).
Link
InterPro Scan - TAIR