1. Home
  2. Mutant Lines
  3. 13-3024-1

13-3024-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage
Phenotype
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Flowering & Growth::dwarf/small)

flower (PO:0009046)
  • present in greater numbers in organism (PATO:0000470)
    (Branching::inflorescene)

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1698364 [Map]; Strand: c
      • AT5G05670.1 - [+] show detail - signal recognition particle binding
        Distance: -211; Region: promoter
      • AT5G05670.2 - [+] show detail - signal recognition particle binding
        Distance: -240; Region: promoter
      • AT5G05680.1 - [+] show detail - nuclear pore complex protein-related
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 13-3024-1 - 3-prime edge
    TCTGTGTCTG CATCTCCTTC CGACGAAAAC AGATACACTC GAGTGAAGAA 
    AGTATGAAAT TTAACTTTAA CGAGACAGAG GATGCACCAG ATTCACGACG
    ATCTCCGACG CCCAAAGAGC CGGTTAGGTG GGTTCCTCTC CAGAGCCACC
    CGGTTTTCGC TTCTCTTCCT TCCTCCCAAG ATGAACCCGC CGTGTCGCAG
    CTGTTTCCGA GAAATTTCAT GGCTTGGGAC GGAGACTCGC GCGTATACTA
    CTGGGATTCG AGACGATATC TCCTTCACCG ATTATCTCTG CGCTTGGGTG
    AACCTGAACC ATCCTCCGTC CTCGCCGCAG TCCCGTCCAA GGTCATTTAC
    TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TNTGTGTTCN CNNCNCTGNN
    TCNNCCAANG TGNGTNNNNA AAAAAATATA TATNGAGCNC TNTTTTNNAG
    CGCNNANNTT TCNNTGTCTN NGANANATTG TGTATNANAA GAGTGAGAAA
    NANTATATCT CTCANTGAGG GNNGANTATN NNAANATTTT TTNNACTCNN
    TNTGCNCTNN TGAAAAANAC CTTTNNNTNC NCTNTGGNGT NTGCGCCACA
    AAANANAATT TNTGGGNGAN AGATNTCTTN TGGAGAGAGA GAANANNCCN
    CCNNCGGGGN GGNNAANCCA CNTNNNTTTA NNNNA

AT5G05670.1

Model type
Protein coding
Short Description
signal recognition particle binding
Computational Description
signal recognition particle binding; FUNCTIONS IN: signal recognition particle binding; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Signal recognition particle receptor, beta subunit (InterPro:IPR019009); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G18770.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G05670.2

Model type
Protein coding
Short Description
signal recognition particle binding
Computational Description
signal recognition particle binding; FUNCTIONS IN: signal recognition particle binding; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Signal recognition particle receptor, beta subunit (InterPro:IPR019009); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G18770.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G05680.1

Model type
Protein coding
Short Description
nuclear pore complex protein-related
Curator Summary
Encodes MOS7 (Modifier of snc1,7), homologous to human and Drosophila melanogaster nucleoporin Nup88. Resides at the nuclear envelope. Modulates the nuclear concentrations of certain defense proteins regulates defense outputs.
Computational Description
MODIFIER OF SNC1,7 (MOS7); CONTAINS InterPro DOMAIN/s: Nuclear pore complex, nucleoporin 88 (InterPro:IPR019321); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR