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13-3048-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3731696 [Map]; Strand: c
      • AT1G11150.1 - [+] show detail - transposable element gene
        Distance: 72; Region: intergenic
      • AT1G11160.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: -1443; Region: intergenic
    Flanking Genome Sequence: 13-3048-1 - 3-prime edge 
    AATCTACCTA CTGATTTTGA CGTGTTTGGA AGAGACGAGA AGAGCTTTTC 
    TTAAAATATA TACAGTATTG GGATTATACA TGAATACTAG CCAAAACAAG 
    AAGTTAGTGA CCTACTAAAT AATGAAAGCA AAAAACAATC TAAAACTATT 
    TTACTATATC ACATAATAAA GTTGTACTTT TCAATATTCT TAAAGTTTGG 
    TTTGAGTTGA TTTCAGATTT TATGTCAATC AATCTGTGGA AGTAACAAAC 
    ATTTCTTATC GAAATAAATG ATCTTCTTTT TACTTCACCA AATAAAGTCG 
    TTGATTGGGA TTGACCCTTA TTATGCAAGA AAACTTAAAA CACCAAAACA 
    TGGGAAGCAC TTAGATCATG TTATGCTCTT GAGTCTTGTC CAAAAGAGAG 
    ACAAATTATA ACACGGGAAC TAGAGTAATA ATTTATAACT AAAAAAAATC 
    AATTTAATAC AATACAAGCA AATGTCACAT ATCATAAACC AGGAGATC

AT1G11150.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, similar to putative AP endonuclease/reverse transcriptase, blastp match of 30% identity and 3.2e-59 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus}
Link
InterPro Scan - TAIR

AT1G11160.1

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Computational Description
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G61210.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR