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13-3074-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16674638 [Map]; Strand: w
      • AT4G35020.2 - [+] show detail - RAC-like 3
        Distance: 0; Region: exon9 (3UTR)
      • AT4G35020.3 - [+] show detail - RAC-like 3
        Distance: 0; Region: exon9 (3UTR)
      • AT4G35020.1 - [+] show detail - RAC-like 3
        Distance: 0; Region: exon7 (3UTR)
    Flanking Genome Sequence: 13-3074-1 - 5-prime edge 
    GCTATANNTG ACCGTGACTT CNTTTTGCCT ANCTTGTNAA NCNTANGAAT 
    CATANANNAN TGATGNCTGC ATNNCTGAAA ATGACAANAG CTCGAANAAC 
    TTATNTAACA AGCTATTTCA GTATNCNAAG TACGNATCCG GNNCNGTAAA 
    TATACCACGC AATCCTTGAT TTCTCTGTTT CCTAGATTCA CACCAATTGT 
    CTTAAGGATT ATGTTCCAAA CCTAAAGACA ATGAGAGCTT ACACGCGCGA 
    ACCAATGAGA ATGAGAGAGC ACTTGTCTTT CTTGGACAAT AGTATCTAAA 
    CCAGCTTATT TGAAACCTTC TGAATGAGCC ANAGTGTCTT CCATACATAT 
    CAATTNCACA TAGACCTAAC CTGATCTTTA GACTATAATC TTCAATGATT 
    TCAGAACCTC AAAACTTGTG GAGTTTANAN TNCGAGNNCA AANNNATNAG 
    ATANTCANCN TNGNNTANGG ACTAGACGGN NGGCCCTCGN GGNGAANNNT 
    NNGANNGANG GAGGGTAACT TNTCCCGGAG NGGGACANAA AANGGGAGNA 
    NNAAANGCGT GGTCCAAACN NAGCAANGAA TGGTGNGNAA GNNANCAACC 
    CCGGNNNGNG AGANCNNCGN GNAACCGCNA NGNNNAAANC NGCGNNAAGN 
    NAGCNTNNCT CCAANNTCCN NTTNCNCNTC GNANGNTNTC CNCTNNNNTA 
    NANNATAGCT NCCGGCCCNG GNGNNGGGNN CCAGNCGCAA AAC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16674532 [Map]; Strand: w
      • AT4G35020.2 - [+] show detail - RAC-like 3
        Distance: 0; Region: exon9 (CDS)
      • AT4G35020.3 - [+] show detail - RAC-like 3
        Distance: 0; Region: exon9 (CDS)
      • AT4G35020.1 - [+] show detail - RAC-like 3
        Distance: 0; Region: exon7 (CDS)
    Flanking Genome Sequence: 13-3074-1 - 3-prime edge 
    CTTATAGCTC TAATTCTCCT GTTGATTCCT TTCTTCTTGT TGAATCAGAG 
    TATAGAACAA CCTTTCTGAG ATTTTCTCTT CTTCTTCTTC TTGTTTTTTG 
    GTGGCTGGAG AACGACCTTG ATAGCCGCAT CAAACACNTG CTTTCACATT 
    CTGTTGAACA GATAACAGAT ATAGGAATCA TCAGCAGATT CAATTGGCGG 
    TTTTAGACAG GTAAAGATTA GATAAAGATA TTGACTCTCA GGTTAATACC 
    TGTTGAGTTT TTGCACTGCA TTCGATATAA GCAGGCGCCC CAATCAGCTT 
    CTTTAGTTCT TCACCCTGTT TTGATACCAT CAAAATATGA AACATGCAGA 
    ATATTAACAC CTAGGATTCA GTTTAGAAAG ATAATGAGAA AGGTACCTGA 
    GCGGTAGAGA TAGGCACAGC ACCAGGGTGC TCGGCAAAGA ATTGCTTATC 
    ATCTCGAAGA TCTGTAAGAG ACTCAGTCAT CAAAATATCA GAAGAGTTCC 
    CCAAAACAGA AAACCCCCGA TAATCAGGCG ATTAAGAGTT GAGCTAAGAA 
    AAAACCAACC AAGCT

AT4G35020.1

Model type
Protein coding
Short Description
RAC-like 3
Curator Summary
A member of ROP GTPase gene family; Encodes a Rho-like GTP binding protein.
Computational Description
RAC-like 3 (RAC3); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Ras small GTPase, Ras type (InterPro:IPR003577), Small GTPase, Rho type (InterPro:IPR003578); BEST Arabidopsis thaliana protein match is: RAC-like GTP binding protein 5 (TAIR:AT1G75840.1); Has 24715 Blast hits to 24687 proteins in 684 species: Archae - 9; Bacteria - 73; Metazoa - 12739; Fungi - 3851; Plants - 2699; Viruses - 20; Other Eukaryotes - 5324 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G35020.2

Model type
Protein coding
Short Description
RAC-like 3
Curator Summary
A member of ROP GTPase gene family; Encodes a Rho-like GTP binding protein.
Computational Description
RAC-like 3 (RAC3); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras small GTPase, Rab type (InterPro:IPR003579), Ras (InterPro:IPR013753), Ras small GTPase, Ras type (InterPro:IPR003577), Small GTPase, Rho type (InterPro:IPR003578); BEST Arabidopsis thaliana protein match is: RAC-like GTP binding protein 5 (TAIR:AT1G75840.1).
Link
InterPro Scan - TAIR

AT4G35020.3

Model type
Protein coding
Short Description
RAC-like 3
Curator Summary
A member of ROP GTPase gene family; Encodes a Rho-like GTP binding protein.
Computational Description
RAC-like 3 (RAC3); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras small GTPase, Rab type (InterPro:IPR003579), Ras (InterPro:IPR013753), Ras small GTPase, Ras type (InterPro:IPR003577), Small GTPase, Rho type (InterPro:IPR003578); BEST Arabidopsis thaliana protein match is: RAC-like GTP binding protein 5 (TAIR:AT1G75840.1).
Link
InterPro Scan - TAIR