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13-3089-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1958973 [Map]; Strand: w
      • AT3G06430.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -674; Region: promoter
      • AT3G06433.1 - [+] show detail - pseudogene, expressed protein
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 13-3089-1 - 5-prime edge 
    NTTATAGAGG AATNTATANA TAAGTAANCN ATGANACTGG NTTTGATAAG 
    CNTTTAATGC GTGAAACAAT TAGGACAAAA TGCCGCCGGA GACTAAGACC 
    TTCAAGTACA TGCCGTTTTG GCTATCGTTA GTTCGTTTCA TCAACGCTGG 
    AATTTGGACT GCTTATTCTT TGATCTACAT AATTGATATC TACGTCCTTG 
    TAAGTCCTTT TTTGTTTTTG TTTTGATCTA CATAATTGAT ATCCTTTTTT 
    GTTTTTGTAA GAAGGGCGAG CTAAAGAGTT TGAAGAGCTT AAAGGCGAGC 
    TGAAGAGCTT AAGGCGAGCT GAAGAGCATG AAGACGAGTT GGAGAGCTTG 
    AAGACAANCT GGGGGACTTG GTGAANANAA NAAGTTGATN AGCTNCCCGC 
    CCGGGNCGGG GNGNANAAAA ACGCCANACG NGGGNNGANG ANGACNGCNA 
    CCCGTNCNNC CTNCCNCNGT ACCNAGNGCN GNAANNNCGG AANAANNACA 
    CGCGACGGNG CGCGNCANGA NGGGNGANGA NNTNGCGNCN CCGGNAGNGN 
    GCNNGNAACN GNNGGGGGCG NGNANCGCNC CCCANNNNCN NCNCCGCGNN 
    NAANGATNNN GNANNANCCN CNCNGNANCA NACANNNGTN AAANTNNGAN 
    NATTCNGGNN CGANGTANTN NCCGTATCNG NANNANNNNT NNATNCGAGN 
    CCGNNCNNAN NNCANTNGAG NCANTNNC

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1958857 [Map]; Strand: w
      • AT3G06430.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -558; Region: promoter
      • AT3G06433.1 - [+] show detail - pseudogene, expressed protein
        Distance: -44; Region: promoter
    Flanking Genome Sequence: 13-3089-1 - 3-prime edge 
    TCAATAAGTG AGAGCCANAG AGAGAGAGAG AGCTTACTAT GGTAAATAAA 
    AGATAGATGA TAACANTGTT GTAAACGTTG CAAACAACAC CAATGAATGT 
    ATGCTTGCCG GCCGGATAAA CTCCCAAATC CCCAGATAGT CATACAATAG 
    ACTGTTGCCA CAAAACTAAA CTCCAACGGA AGCAATAGAT AAAAGAGTAA 
    TATCTGCACA TCAACATCGA CATCATCAAA ATCAATATAC AATATTTTTC 
    TGGATTTGTT TTTTTTTTNT TNGGGATNTT TNTNTAAAAT TTANNCAAAA 
    TNGNGTTNGT TNGTNNCCNC NTTTNGGGCC CCAGNCNCCA NTCCTTNTTT 
    TTNTTNTAAA ATNTNTTTTN GANNCTANAA TNNGGGATTT NCCTTTNAGT 
    TTTATATNTA TATANCCTCN CANAGNNGCG NNCNCCATAT NATNATTTNT 
    NATNTTTTNN ANCNCNAAAA AAANNCCCNN NTTTTTTTTT AAANNGANNA 
    NTTNNGGGAT CTTTTTAAAA AANNCANCCN GNTTTTNAGG GGTTTANAAC 
    GGANNAANGG TNTTCCNGGN NGGGTTTTAT AACCGGGTTT TTTCCCTTNC 
    CCNCCCNAAG GGGGNTTTCG NGGGGATTTT TCCGNAAAAA AAGNGNCNGG 
    GGGGGGNNAA NGAAAAAAAN AANGGGGGCN AGGGNCTCCN CCCTTTTTNT 
    TTCTNCNGGG GGNNNNCCCC ANANCCCCGG GGGGG

AT3G06430.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
embryo defective 2750 (EMB2750); INVOLVED IN: pollen tube development, embryo development ending in seed dormancy; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G53170.1); Has 31867 Blast hits to 12007 proteins in 283 species: Archae - 3; Bacteria - 31; Metazoa - 288; Fungi - 376; Plants - 30037; Viruses - 0; Other Eukaryotes - 1132 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G06433.1

Model type
Pseudogene
Curator Summary
pseudogene of nodulin MtN3 family protein
Computational Description
pseudogene, expressed protein
Link
InterPro Scan - TAIR