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13-3175-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30388660 [Map]; Strand: w
      • AT1G80860.1 - [+] show detail - phospholipid N-methyltransferase
        Distance: 0; Region: exon2 (CDS)
      • AT1G80860.2 - [+] show detail - phospholipid N-methyltransferase
        Distance: 0; Region: exon2 (CDS)
      • AT1G80865.1 - [+] show detail - unknown protein; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bac...
        Distance: -878; Region: promoter
    Flanking Genome Sequence: 13-3175-1 - 5-prime edge 
    ATGACTCCAA ATGGGAACTC TGTAACCCAT GGTATGTTCT TCCCGAATCG 
    AACACCGTAA TAAGTCCCAG CTTCACCTAA CAATTGGTAT ACCCTGCAAA 
    GATGTGACCT TTTAAGTCAA CAAAACTTTA CAACAAGAGA GCTCAGTTAC 
    AGAACATAGA AGTGTCCACC ATATCAAACA TCACTCAATA TCCATTTTGT 
    TGGGACAAAA ACACAACTTC ACCTAACAGT CAAAGATGTG ACCTTCAAGT 
    ATCAAACTTT CACAAAACTA AACCAGATTC GATGATTAAA ACTTGAAAAA 
    AGAAAAGACA AAACTTTCAC AACGTCTACA GATGCAATTT CAAACTAAAA 
    ATGGATTTGA CTAAAGATCT TTATTATCAT CGATCTCATG CCATTCGATT 
    CGATTACGAA TT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30388544 [Map]; Strand: w
      • AT1G80860.1 - [+] show detail - phospholipid N-methyltransferase
        Distance: 0; Region: exon2 (CDS)
      • AT1G80860.2 - [+] show detail - phospholipid N-methyltransferase
        Distance: 0; Region: exon2 (CDS)
      • AT1G80865.1 - [+] show detail - unknown protein; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bac...
        Distance: -994; Region: promoter
    Flanking Genome Sequence: 13-3175-1 - 3-prime edge 
    GGAGTCATTA GAGATCCACA GTATGTTGGG AGTATCATGT CTCTATTGGC 
    ATGCCTCTCT TGGGTTCCAT TTCAATACAT TCTCCTCTGG TCTCTCGGTT 
    ATGTTTTCAT GATGTTTCTC GAGTCAAAGG AGGATC

AT1G80860.1

Model type
Protein coding
Short Description
phospholipid N-methyltransferase
Curator Summary
Encodes a single-copy phospholipid N-methyltransferase, involved in phosphatidylcholine biosynthesis. Has specific activity towards phosphatidylmonomethylethanolamine and phosphatidyldimethylethanolamine, but not phosphatidylethanolamine.
Computational Description
phospholipid N-methyltransferase (PLMT); CONTAINS InterPro DOMAIN/s: Phospholipid methyltransferase (InterPro:IPR007318); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80860.2

Model type
Protein coding
Short Description
phospholipid N-methyltransferase
Curator Summary
Encodes a single-copy phospholipid N-methyltransferase, involved in phosphatidylcholine biosynthesis. Has specific activity towards phosphatidylmonomethylethanolamine and phosphatidyldimethylethanolamine, but not phosphatidylethanolamine.
Computational Description
phospholipid N-methyltransferase (PLMT); CONTAINS InterPro DOMAIN/s: Phospholipid methyltransferase (InterPro:IPR007318); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80865.1

Model type
Protein coding
Computational Description
unknown protein; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR