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13-3211-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage		 Phenotype
vascular leaf (PO:0009025)
  • variegated (PATO:0000335)
    (Leaves::variegated leaves)
sporophyte vegetative stage (PO:0007134)
  • abnormal (PATO:0000460)
    (Flowering & Growth::growth defective)

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 729940 [Map]; Strand: w
      • AT4G01690.1 - [+] show detail - Flavin containing amine oxidoreductase family
        Distance: 0; Region: exon1 (CDS)
      • AT4G01690.2 - [+] show detail - Flavin containing amine oxidoreductase family
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-3211-1 - 5-prime edge 
    GATTACCCAA TCTGAAAAAA ACCAAGAAGC TGACAAAATT CCGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 729824 [Map]; Strand: w
      • AT4G01690.1 - [+] show detail - Flavin containing amine oxidoreductase family
        Distance: -63; Region: promoter
      • AT4G01690.2 - [+] show detail - Flavin containing amine oxidoreductase family
        Distance: -63; Region: promoter
    Flanking Genome Sequence: 13-3211-1 - 3-prime edge 
    GGGTAATCTT CTTCAGAAGA AAGGAGATGA CGACGAGAAA TATTCACCTG 
    CAATCACACA CACCATAAGT CTGTGTACCG TACCGTATAC TTTTTCTTTG 
    GTTTGGGTTT AGAGTTGGGT TTGACCCAAA TATAAAAAGG ACCATTACNG 
    TTTATTTTAT TATTTTAGTT AGGCCCAAAT TTGTTATAAC ATGGTTATAG 
    GCCCAATAGA TATATAACCA AACCTTTTTT TTTTTNGNNN TNTNNANCCA 
    ACCNTNNAAC CCCNTTTTTT TNGNTTNGNT TTNTAANGTC NAANCCGNNT 
    TNNTAANANG NNCCNTTTTT TGGNANTNAG GGTTTNTTTN GNAANTAANN 
    NTTTNANTNT TTAANTTGGG AAATTTTAGG NNCNAANTTT GGNNGNAAAT 
    TTNANTNANT NCCNNNAAAN NCGGNTTNNA NGNNAANGCC CTTTTTTCCN 
    AANNTTTTTN AACCCTTTTT ANNAAAGGGC ANCNNNCTTT TNNAANTTTN 
    NNAAANTTNT TTATTCCNAC CNATTTTTNA TTTTNNNCCN NTGGGTTANT 
    AAANNNNNCN TNTTTANNGT AANCCCCCCT TNTTTAATTA AAANCGGGNC 
    TNGGNCNTGT NTTTNNNCNG CCCCTATTTA ANCNAGGGCC CNAAAAATGG 
    GGTTTTNNNC TCGGGNNNNG GCCCANTNAT TTTTTNANTN AATTTTNCNC 
    CCCCCCNAAA AAANCNTTTN NNAAAAAANT TTTNGGGGGN NNTCNNNACN 
    NNAT

AT4G01690.1

Model type
Protein coding
Short Description
Flavin containing amine oxidoreductase family
Curator Summary
Encodes protoporphyrinogen oxidase (PPOX).
Computational Description
PPOX; FUNCTIONS IN: oxygen-dependent protoporphyrinogen oxidase activity; INVOLVED IN: porphyrin biosynthetic process; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937), Protoporphyrinogen oxidase (InterPro:IPR004572); BEST Arabidopsis thaliana protein match is: Flavin containing amine oxidoreductase family (TAIR:AT5G14220.1); Has 2258 Blast hits to 2244 proteins in 787 species: Archae - 6; Bacteria - 1416; Metazoa - 200; Fungi - 137; Plants - 154; Viruses - 0; Other Eukaryotes - 345 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01690.2

Model type
Protein coding
Short Description
Flavin containing amine oxidoreductase family
Curator Summary
Encodes protoporphyrinogen oxidase (PPOX).
Computational Description
PPOX; FUNCTIONS IN: oxygen-dependent protoporphyrinogen oxidase activity; INVOLVED IN: porphyrin biosynthetic process; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937), Protoporphyrinogen oxidase (InterPro:IPR004572); BEST Arabidopsis thaliana protein match is: Flavin containing amine oxidoreductase family (TAIR:AT5G14220.1); Has 2189 Blast hits to 2187 proteins in 783 species: Archae - 6; Bacteria - 1392; Metazoa - 195; Fungi - 135; Plants - 152; Viruses - 0; Other Eukaryotes - 309 (source: NCBI BLink).
Link
InterPro Scan - TAIR