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13-3228-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10891480 [Map]; Strand: w
      • AT4G20160.1 - [+] show detail - LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: ...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-3228-1 - 5-prime edge 
    GCGAGGACAA CGCAGCAACC ACCAAGCTCG AACCAATCCC TAATCGATAG 
    CAGAACAAGT TCTATGGGAT CAAACGCTCT AGAGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10891364 [Map]; Strand: w
      • AT4G20160.1 - [+] show detail - LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: ...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-3228-1 - 3-prime edge 
    GTCCTCGCCT CCCATATCTG AACGAGAGAA GAAGCTGCGT TTCTTGACGG 
    GTTCTCGAGT TGACCTGAAT T

AT4G20160.1

Model type
Protein coding
Computational Description
LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G30860.1); Has 64917 Blast hits to 39974 proteins in 1949 species: Archae - 279; Bacteria - 7425; Metazoa - 26604; Fungi - 5788; Plants - 3193; Viruses - 275; Other Eukaryotes - 21353 (source: NCBI BLink).
Link
InterPro Scan - TAIR