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13-3229-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9524942 [Map]; Strand: w
      • AT4G16920.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 13-3229-1 - 5-prime edge 
    GNGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATTATTN TAGCTTCTTT GGATTCCAAG CACAGTATTG ATTTTATTGC 
    CTCTATATGA TGCTTCAATT CCGACTAAGN CACCANAACC CTNTGGCTGG 
    ATGAAAAAGT TTATTGGAAA CATCATNGGC TATCTTTTCA ACCATATGCG 
    CATCATTAGG CCTAATAACA ATAGNCAAAT GTGTCAATNA AGAGGCACCC 
    TTAAAAGCAC ATCCAAGTCT ATGCAAAAAA TATTGTATAG TTCTACGATA 
    ATTATAAGAC ACACACATAN TTCAAAAAAA AAANCNCNCN TTNTTNTNGG 
    AGCTCAAANN ANCATACNCG TCCCAAAAAT CCNCCCNGGA AATNTTTNAT 
    NNTTCNGGGA NANCTTAANC CNATCTTNGT TCNNNACNNG CGGGTTGGNC 
    CNCCCANGNC TTTTNAAAAA CCTTTCCAAA TTNNCCGATN NGTTNNTTAA 
    CNNNANAAGG NNNANCNGGN TAAAAAACNG GNNTCNCCTT TNGTCNAAAN 
    NNTTTAAANC ANTGGGGGAT TTCAACCAAT NATTNNNGNC CCCANGNGNN 
    AAANNCTTNT TTCNNAAAAA AAAAAGNTNN GNAAATCCNN GCTTTTNTAA 
    TNNCCNATNN AGCCNCNTNG GNANTTANGC AGCTTCTCTN GAGGACGGGA 
    NCCCTGAATG TNTGGATGGG NCNGCNATGG GCCTCCTTAA AAAAAAGGCG 
    GGGGGAAATT NTTGCAAAAN TTNCCCCCCN GGAN

AT4G16920.1

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Computational Description
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16950.2); Has 33072 Blast hits to 18315 proteins in 784 species: Archae - 24; Bacteria - 2125; Metazoa - 2462; Fungi - 169; Plants - 26873; Viruses - 34; Other Eukaryotes - 1385 (source: NCBI BLink).
Link
InterPro Scan - TAIR