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13-3231-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 10429398 [Map]; Strand: c
      • AT1G29785.2 - [+] show detail - other RNA
        Distance: -315; Region: promoter
      • AT1G29785.1 - [+] show detail - other RNA
        Distance: -265; Region: promoter
      • AT1G29790.1 - [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
        Distance: -578; Region: promoter
      • AT1G29790.2 - [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
        Distance: -627; Region: promoter
    Flanking Genome Sequence: 13-3231-1 - 5-prime edge 
    ATCTTCACAC ATTCACATAG TTCAAGTGTT TTACTCTTCT AATTTTTTAG 
    GCACTTACCA TAATATGACA TATTTTAGGA TCATGTTTTA TTACAAAGTG 
    AGATTACACC TATGAACGTT TGAATCTAAT CCATAACACA AATCTATAAG 
    AAATTTGAAA CTAATATCTT AACATGGATC AATTTGGGCA AAATTTGTAG 
    AGCTAAGAAG TTGGGAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 10429467 [Map]; Strand: c
      • AT1G29785.2 - [+] show detail - other RNA
        Distance: -384; Region: promoter
      • AT1G29785.1 - [+] show detail - other RNA
        Distance: -334; Region: promoter
      • AT1G29790.1 - [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
        Distance: -509; Region: promoter
      • AT1G29790.2 - [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
        Distance: -558; Region: promoter
    Flanking Genome Sequence: 13-3231-1 - 3-prime edge 
    ATTGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC 
    AAGATAACAT TCTAGGTTAT GTTGCTGGAC ATATGTTTGA TGCTGATTAT 
    ATTCTCCATC AAGTAAACAA AATTGATACC ACTAATTTTA GTCTTTTTAG 
    ACACATAATG AATTAATGAT CCCATCTTGT TGCAATAAAG ACACAACTAG 
    TCTGAAAAAA GAAGAAAGAG GACAAGACAT GTGAACACAT TACAGATCTG 
    TTTAAATTTG TTTGTGCTTA TTAAACCAAG AAATTTAACT GTTTTCTGTG 
    CTGTTCCAAC AACATTTCAC CAGGATTATT ACTCATCCAT GCAAAAAACT 
    TGGGGAAAAA AAACTAATAA TGACATTGGA TTCGATATTT CTCTTTTTCC 
    CATTGTAATA GTAGTAATTT ATAAACTCAN ATCTCTGTTT TGACTAGCGA 
    GTCTCCTACA TGAAAAAAGC T

AT1G29785.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT1G29780
Link
InterPro Scan - TAIR

AT1G29785.2

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT1G29780
Link
InterPro Scan - TAIR

AT1G29790.1

Model type
Protein coding
Short Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Computational Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT5G40830.2); Has 271 Blast hits to 269 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 271; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G29790.2

Model type
Protein coding
Short Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Computational Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT5G40830.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR