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13-3244-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26238394 [Map]; Strand: c
      • AT5G65640.1 - [+] show detail - beta HLH protein 93
        Distance: 0; Region: exon2 (CDS)
      • AT5G65640.2 - [+] show detail - beta HLH protein 93
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 13-3244-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCT 
    TGAGATCAAA CGAATAGTGG CTAAGCCAAA GGTACAAAGA TATTTTACAT 
    TGCTCTTGTT TTTTTCCTTC TACATATTAG CCCTTGTATT TATGAATTGT 
    TATAAACAAA CCCCCTGTCT TTTTAACAAA TCTTTTTGTA ATTCTGTTTA 
    TGTTTTGCAT AGTTTGAAAT AGATCGTAGA GACGAGGATA CTCGACCCG

AT5G65640.1

Model type
Protein coding
Short Description
beta HLH protein 93
Computational Description
beta HLH protein 93 (bHLH093); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G10570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G65640.2

Model type
Protein coding
Short Description
beta HLH protein 93
Computational Description
beta HLH protein 93 (bHLH093); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G10570.1); Has 2660 Blast hits to 2654 proteins in 148 species: Archae - 0; Bacteria - 0; Metazoa - 79; Fungi - 20; Plants - 2556; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR