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13-3268-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4534323 [Map]; Strand: c
      • AT1G13250.1 - [+] show detail - galacturonosyltransferase-like 3
        Distance: -4260; Region: intergenic
      • AT1G13260.1 - [+] show detail - related to ABI3/VP1 1
        Distance: -7845; Region: intergenic
    Flanking Genome Sequence: 13-3268-1 - 3-prime edge 
    ATCAACATTG TGTTATGCGT CAACGAGTGA TGCTGAACAT ATAATTGTTT 
    GACTTCCAAT AATATCCATG CAATAATTGA CTTTTGTATT GCAAAAAAAA 
    AAAANGGGGN AAAANCCCNC CTNANNNNNN TNANTTGGCC AAGGGAANTT 
    NAAANAANCN TTNCCCCNTN ANTTTTNTGG NACCCCCNNC CCCAAGNNCC 
    CGGNNNTNTN GGGAATNNTN NNCCTTTNNN CNNCTTTTTN ACCGGNNNNA 
    NNNNAAACCC CNGNAAAATN GNCCNAANCN TNANGGGNNN AANCTNTTTT 
    NGGGCCCAAN NNNNAANTTN AGGGGANNNA NAAANTTGGG GGNAANAAAA 
    NTNGNNNNNN AAANTGGGGG NNNANATTNT NNNGGGNTAA ATNTTNGGNG 
    NCCCAANCCN GNAAAAAAAN NNTNNAAAAN TTCCCNGNAA AANNTNTTTT 
    TTNNNNNAAA ATTNCNAATT TNTAANGTTT AAANTTTNTN CCNAATAAAN 
    TTTCAAGGGG GNGNANCCTT GGNCNNCTNN TTTAAATNTN GNCTTTNANA 
    GCNNCCCAGN TTTNNTTTTN NCCCNNCTTT TTNGGGGACT GGGGCCNATT 
    TTTNNGGGGG TTNNNNNGGG GAGNGNGTNN TTAAACCCCT TTTCNNNCAA 
    AAAAATTTTT TTTTAAANTN CCNGGGTNCN NATTNNGGNA AANTTTTTAA 
    AAAAGGGGGG NNNCCCCCAA AN

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4534207 [Map]; Strand: c
      • AT1G13250.1 - [+] show detail - galacturonosyltransferase-like 3
        Distance: -4144; Region: intergenic
      • AT1G13260.1 - [+] show detail - related to ABI3/VP1 1
        Distance: -7961; Region: intergenic
    Flanking Genome Sequence: 13-3268-1 - 5-prime edge 
    ATGTTGATTA TATATCTATG ATATCATGTA TATATTTTCC TAAGAACTTA 
    GAGACATATC TTTATACGTA TTCACGGACC GACAATTTTA AGACACCATA 
    TGATGTTACA GATTCCGCCG GTGACCTTTG ACGGAGTCCA TCATCACAAG 
    TCGCTGTTAA AATGCCAAAT AAGTTATCTA AATAGGGCCC TTTAAAATAT 
    AGGGTTTTGG CTCCGGCTGA TATGATAACC GTAAATGTAC TTATTTTAAT 
    AAGTTAAGTA TTTGTTTCAG AATTGACATT TATCGTAAAT AGCTATAGCT 
    AAGCTAAGTA CATGTGAGTT TTGGAGTATA TTAATAATAG TTCGNAAGTG 
    AAAATATCAA ATTTATTTAT ACAAAATTAA GCAAATAATT CACTTTATAT 
    AGTGGAAGTG TCGTGAGCAA AGTAAGTAAT AAACTTTATT AATTGCTTTC 
    TATGCCTCGA

AT1G13250.1

Model type
Protein coding
Short Description
galacturonosyltransferase-like 3
Curator Summary
Encodes a protein with putative galacturonosyltransferase activity.
Computational Description
galacturonosyltransferase-like 3 (GATL3); FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: galacturonosyltransferase-like 4 (TAIR:AT3G06260.1); Has 2168 Blast hits to 2160 proteins in 496 species: Archae - 2; Bacteria - 1004; Metazoa - 285; Fungi - 17; Plants - 765; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G13260.1

Model type
Protein coding
Short Description
related to ABI3/VP1 1
Curator Summary
Encodes an AP2/B3 domain transcription factor which is upregulated in response to low temperature. It contains a B3 DNA binding domain. It has circadian regulation and may function as a negative growth regulator.
Computational Description
related to ABI3/VP1 1 (RAV1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Transcriptional factor B3 (InterPro:IPR003340), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene response DNA binding factor 3 (TAIR:AT3G25730.1); Has 6277 Blast hits to 6015 proteins in 258 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 6251; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
Link
InterPro Scan - TAIR