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13-3317-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 18271812 [Map]; Strand: w
      • AT1G49360.1 - [+] show detail - F-box family protein
        Distance: -2364; Region: intergenic
      • AT1G49370.1 - [+] show detail - pseudogene, similar to OSJNBa0072F16.8, blastp match of 42% identity and 6.6e...
        Distance: 3238; Region: intergenic
    Flanking Genome Sequence: 13-3317-1 - 3-prime edge 
    TGAGANCNGC TAGNAGGTAT NCTACCGTCC GTTANCGACC GTTTTNATCC 
    CTNTNGTGGN GGCCGATTNN GGGNCAAAAN CNCAAACTNT CNGAAATCAA 
    TTTCAATCCC TAATTATNCT ANCTTCAGAT ATANAGCTTN NCTNNCCAAG 
    GCCTNCAACC GATNGNTNCC AANCTGTCAT CTATGANATG GCCANATGGG 
    TGTTGTTGCG GTTAGGCAGT NCTTGTAGCT TCTACCAACA AGAATNCNCA 
    ATCACATTTG GATCAAGATC

AT1G49360.1

Model type
Protein coding
Short Description
F-box family protein
Computational Description
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G57790.1); Has 351 Blast hits to 349 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 351; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G49370.1

Model type
Pseudogene
Computational Description
pseudogene, similar to OSJNBa0072F16.8, blastp match of 42% identity and 6.6e-73 P-value to GP|21739229|emb|CAD40984.1||AL606460 OSJNBa0072F16.8 {Oryza sativa (japonica cultivar-group)}
Link
InterPro Scan - TAIR