Home
Mutant Lines
13-3318-1

13-3318-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 3520636 [Map]; Strand: c
- AT1G10640.1 - [+] show detail - Pectin lyase-like superfamily protein
  Distance: -2748; Region: intergenic
- AT1G10650.1 - [+] show detail - SBP (S-ribonuclease binding protein) family protein
  Distance: 3382; Region: intergenic

GATACAATAG CCAACAACCA AAAGAAATTA AACAATTAAT TAGAAACGTA 
CAGTATTGAA ATTAATTTAA TCTCCTCTGT TTCGTATATC ATCCGACAAC 
ACATTGTAGT TTACGTTGTT AGATTATCAA ATTCCCCATT TTAATTTTAT 
TGGAATATTT GTTTAGTAAC TACCAAGATG ATCAACGCTT CATGTGATAA 
AATTCTTGTC ACAATATATA CGTATCTATT TTTTTATTTA TTTTTTGAAT 
AATTTGAAGA ATCAGAAATA CTCCTACATA GCCAACAGCT TTTTGGCTGT 
CAAGAAGAGG ACTCTGTCGA ATCACATATA TGTGTGTTCA TCACATGATA 
TTTTACTATT GCAGAATAGT AAATGAATGA TTAACCACAT AATTTATTAT 
TATTCTAAAA ATCCAGGATG AAATTTAAAT AATACAGTAT AGTATTAGTC 
AATTTGCTCT GTTATGACAA AACAAGTATA CTTAGATTTT TTCTCATTAC 
AGCATTTGAA GTTAGCATTC TTTTGTATTT ATTTTTTAAT TGGACTAGGT 
TTTACTTGAC AGANAAATGG NGTAAAACTA TTANCACACA AAGNTACCAN 
NNCGGGCCGN NGACCNCNCG TGC

AT1G10640.1

Model type: Protein coding
Short Description: Pectin lyase-like superfamily protein
Computational Description: Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Parallel beta-helix repeat (InterPro:IPR006626), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G60590.1); Has 4327 Blast hits to 4306 proteins in 507 species: Archae - 6; Bacteria - 1323; Metazoa - 14; Fungi - 1302; Plants - 1545; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G10650.1

Model type: Protein coding
Short Description: SBP (S-ribonuclease binding protein) family protein
Computational Description: SBP (S-ribonuclease binding protein) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: SBP (S-ribonuclease binding protein) family protein (TAIR:AT1G60610.3); Has 1212 Blast hits to 1212 proteins in 167 species: Archae - 0; Bacteria - 2; Metazoa - 524; Fungi - 0; Plants - 416; Viruses - 105; Other Eukaryotes - 165 (source: NCBI BLink).
Link: InterPro Scan - TAIR