1. Home
  2. Mutant Lines
  3. 13-3341-1

13-3341-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22237068 [Map]; Strand: w
    Flanking Genome Sequence: 13-3341-1 - 5-prime edge 
    CAGAGAAGAC AGCAACGGAG GTAACCAAAA TAGAAACGGT TATATATTCG 
    CAAAATCTAT ACACAGATTG AGTCAACATC CTCCAACAAA AAGTATTAAC 
    AAGTGATTGA AGAAAGAACG AGAGACTCTT CTTGTGGCGT GTGTGTGTAA 
    GAAACCTACG TAGACGCGTG ATCATATAAC TACAAGTCTT TTGTGAATGA 
    ATTGATGAGG TTATTTTCGT GGACTAGGAG TCTGTTGAAC CAAGGATTCA 
    CACAATAGAT TTGTTTAGAG AGGGAAAACA AATCTAGTAA TTTCTCTTCA 
    TTAGGTATTC TATCCAAGAC TCGATTACAA AACATGTTCT AATCTCTTAT 
    GAAATATATT AGGGTTTTGC TCAAGAACAG AAAAAGAGTT AGGGTTTTAA 
    AAAGGTATAG CTGCATCCAT GATGGATTGC CTACGTACCC TGTGAAGGGA 
    TCAAGCCATT CGTAGTTCTC AATAGGTATA AAGTTATGTG TTTCTTCTCC 
    GTATCCAAAG ATCTCCCTTT TGTGAAGTCC CTGAGGCACT TTATATAGGA 
    TC

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22552841 [Map]; Strand: c
      • AT3G60966.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-3341-1 - 3-prime edge 
    CTTCTCTGTA AGATTCGCCA CTTTGATCAT CATAAGTCCA TGGTATCGCC 
    ACCGCACTTT TACGTTCCGC CGGTGGAGAG CGGCGGCAAA CGATGATTCG 
    TCTCCGCCTT TCTGCGCCGT GTGTCTACAA GAGGCNGGAG GAAGGAGAGA 
    AGATGAGGCG ATTAACGATT TGCCGTCACT GTTTCCACGC GGATTGCATA 
    GATACATGGC TCAGTGAAAT GTCCAAGTGT CCGTTGTGTA GAGCTCAGAT 
    TCCTCCGTTA CCGCCGGCAA GTCCTATGCT CTTACTGTTT TTTCCGGCGG 
    GTGTGATTGA TTTATTCAGC AAGAAAGAAT CTCGTCGCGT AGCTCTCTAG 
    CTTCGAATT

AT3G60164.1

Model type
Pseudogene
Curator Summary
Pseudogene of AT3G60966; protein binding / zinc ion binding
Link
InterPro Scan - TAIR

AT3G60966.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G44581.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR