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13-3359-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 55534 [Map]; Strand: c
      • AT4G00140.1 - [+] show detail - Calcium-binding EF-hand family protein
        Distance: -2085; Region: intergenic
      • AT4G00150.1 - [+] show detail - GRAS family transcription factor
        Distance: 1665; Region: intergenic
    Flanking Genome Sequence: 13-3359-1 - 5-prime edge 
    CCTAGGAGTT AGGAAGATTT TGATTTTGTT ATAATCAGAC TTTAACTCAC 
    ATCTGTCTTC CATCATCCCA CTGTTTTTCA AGTATTTTAT TATTAGTTGT 
    TAAAAACTTC TACGTCCAAA ATCTCAATCA CTACNGAGTA TTGCAATGTT 
    GATATTGTGC GTTAAATGTA TATGTATATA ATTCCAAATT TCCAACAATT 
    GGTTTATAAA CGATGGCACT AACATAACCT CATATATTGT GATACAACGA 
    AAGGCACCGG ATGGTGGAAC GCATCACGCA TCATGCATCC TCGATCCCTT 
    TTCAAAGTGG TATGTAAGAG ATCATTATTT CAACATAACA TACATTTGCT 
    ATGATGACGC ATTTTAGTCA AATTAGTTGT TTGTTCAATC ATATTAATAA 
    GGGTCAACAG ATATTTATAC GAACTGTAAT TAAAATGATA AAATCCAAAG 
    CGACAAGTTT GCTACTACCA AATGTGTGTT TAATATATAT AATTTAGAAA 
    CATTGAATTT GAGAAAATGA GTATACGGTT GCACAAAAGA AGAAGAAGAA 
    GAGGAGTATA CCAACAAAAG GTTGTACGTA ATATAATTCC GACCCCCTAA 
    AAAGATATAT AATAAGGTGG AGAGCGAGGG ATCTGAAATT GATGGGTGTG 
    TTTTTGTGTG CATAACAAAA GTTAAAAATG TATTTATATT ATTTTNAATT 
    TTAAAATTCT TTTCTTA

AT4G00140.1

Model type
Protein coding
Short Description
Calcium-binding EF-hand family protein
Computational Description
embryo sac development arrest 34 (EDA34); INVOLVED IN: polar nucleus fusion; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: calmodulin-related (TAIR:AT1G73440.1); Has 80 Blast hits to 56 proteins in 14 species: Archae - 3; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00150.1

Model type
Protein coding
Short Description
GRAS family transcription factor
Computational Description
HAIRY MERISTEM 3 (HAM3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT2G45160.1); Has 2283 Blast hits to 2233 proteins in 293 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2281; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR