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13-3381-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1751070 [Map]; Strand: c
      • AT5G05810.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 2815; Region: intergenic
      • AT5G05820.1 - [+] show detail - Nucleotide-sugar transporter family protein
        Distance: 618; Region: intergenic
    Flanking Genome Sequence: 13-3381-1 - 5-prime edge 
    CTCTCGACAG GGAAAAGAAA AAAAAAGCAA GAGTAAAATT TTCAGGAGAT 
    AGAGAGAGGA AAAAGCCAAA ATGGGGTCGG AGAGAGATAT AGGAGTAAAT 
    TGGTTAATAT AATANACTTA CAAGTCANAC AAAAAAGCTG AAAAGAAACC 
    AAAAAAGGCT TGATTAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1751186 [Map]; Strand: c
      • AT5G05810.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 2931; Region: intergenic
      • AT5G05820.1 - [+] show detail - Nucleotide-sugar transporter family protein
        Distance: 502; Region: intergenic
    Flanking Genome Sequence: 13-3381-1 - 3-prime edge 
    GTCGAGAGAG TTAATATTAT TGTCACATTA CAAGTTTTGG TACCATGACT 
    ACGTGGAGTC TTTCTCCATC ACACTCATGC TTCGAAGAAA CCATGTTTTA 
    GCAAGGAGGT TTAAAAACAC TACATAGAGT GTGTTCTTTA CACATTTTGG 
    GTCAAACAAT CCTGAAAATT TACGACATAT ATTTGGAATG GCCTACTTGG 
    TAATGTGTGG ATTAGATTCA TGAAAGTGAG ATATGCTGCA GTGAATCCGG 
    ATCTACGGCT TGATATGATA ATGGCTGCCG TTACCAGATA AAGAAAATGA 
    AGCGAGTGAT TTGACAAGAC AAAGACTATA GACAAAGACA AGACTATGTC 
    TTCTTCATAA GTAAAAATAA CTCTCTTGTC TCCTTTCTCT CTTTTAGATA 
    TTTCTTCTGC AAACTGTTAT CACTTCCTAT TCTGATTCTC TGCTCTGCCA 
    CTACACAGCT ATTTGATCTG AACAACTCAG GAACCTTGAG ATAGCTTAAT 
    ATTGAATTGA ATT

AT5G05810.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
ATL43; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G20030.1); Has 8903 Blast hits to 8881 proteins in 285 species: Archae - 0; Bacteria - 2; Metazoa - 2283; Fungi - 641; Plants - 4839; Viruses - 72; Other Eukaryotes - 1066 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G05820.1

Model type
Protein coding
Short Description
Nucleotide-sugar transporter family protein
Computational Description
Nucleotide-sugar transporter family protein; FUNCTIONS IN: organic anion transmembrane transporter activity; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide-sugar transporter family protein (TAIR:AT3G11320.1); Has 3144 Blast hits to 3139 proteins in 327 species: Archae - 14; Bacteria - 156; Metazoa - 754; Fungi - 474; Plants - 1369; Viruses - 0; Other Eukaryotes - 377 (source: NCBI BLink).
Link
InterPro Scan - TAIR