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13-3387-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 18470303 [Map]; Strand: w
      • AT1G49890.1 - [+] show detail - Family of unknown function (DUF566)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-3387-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATTTTC AACCACTGAC CCAAGAAACC CACCTCGAGA 
    TCGACCTCAA TCTCTTACCA ACAATGGCGG ACAAAGAAGA CCCAGAGGCA 
    AACAAGTTCC TTCTCGCTAC TTATCTCCTT CTCCGTCTCA CTCTGTCTCT 
    TCCACCACCA CTACCACTAC CACTACTACC ACCACCACCT CTTCTTCCTC 
    CTCTTCTTCT TCCTCTGCAA TACTCAGAAC TAGTAAACGA TACCCATCTC 
    CTTCGCCTTT ACTCTCTCGC TCCACGACGA ATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 18197825 [Map]; Strand: c
      • AT1G49200.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -402; Region: promoter
    Flanking Genome Sequence: 13-3387-1 - 3-prime edge 
    GAAGATACAA CAAAATCTTC CTCTTCTTGA TAAAAAAAAC AACAAAAATC 
    TAAAGTAAAT AAAATAAACT TCAATCACTG AATAATGGAA ATCAAATAAA 
    ATCCAGCTTA TCAAGAATCA ACACAAGACA ATAAAACAAA GTTTTCCAAT 
    TTAAAGTGAG ACAAAAAGTA ATGATAGAAA ATTCAATGTT GGAAAAGTGA 
    GAGTCCCTAC ACAAGCATCT TGTGGTTGGA GAGGTATGGG CCAAATGGCA 
    CAATAAGCAC TCAATGATTC ATGAATTTGG ATAAGCT

AT1G49200.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G49220.1); Has 8744 Blast hits to 8720 proteins in 274 species: Archae - 0; Bacteria - 0; Metazoa - 2273; Fungi - 539; Plants - 4805; Viruses - 46; Other Eukaryotes - 1081 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G49890.1

Model type
Protein coding
Short Description
Family of unknown function (DUF566)
Computational Description
Family of unknown function (DUF566) ; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF566 (InterPro:IPR007573); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF566) (TAIR:AT3G19570.2); Has 9198 Blast hits to 4153 proteins in 422 species: Archae - 34; Bacteria - 1349; Metazoa - 2630; Fungi - 1436; Plants - 341; Viruses - 197; Other Eukaryotes - 3211 (source: NCBI BLink).
Link
InterPro Scan - TAIR