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13-3419-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26507292 [Map]; Strand: c
      • AT5G66350.1 - [+] show detail - Lateral root primordium (LRP) protein-related
        Distance: -723; Region: promoter
    Flanking Genome Sequence: 13-3419-1 - 3-prime edge 
    CATACACTGA TGTATATCAA TTGTCCCGTA TACCTATACC CCATGAATCT 
    TAATTTAATT GACCAATTAA TCATTCCAAA TTTTAACGAA TTTCAGTTGT 
    TTCAGAATAT CAAACTACAG ACAAAGTAAA AAACTTGAAG ATAGTTCATG 
    GATTTTTCCA AAAGGATATG GAGAGTTGAC TAATAAGAAG AGGGGCACTA 
    TAGTCATTTC CTAGTGGAAA TACCCACTGT TGTGTAAAAG AGAGAATACA 
    TTTAATGAAA GTGAGGTTGT AAAAAATACA TGTATTTATG AAATGGATGA 
    AAGTTATTGT TGACATAAAC AATCAGCAAA ATCATCTATC CAACCTCTTC 
    ACCGTATTGT AAACAATGTT AATGTGTATC TATGAAATAG AGTATAAAAG 
    ACAACTTTAA ATTTGATCTA GAAGCTGTAA ATTTCAGAAA TCAATTTGGA 
    TGTTTTAATG GTTTTCTTGT TATGACAATC TTAATGTATG TGAGGGTTTG 
    TACTTTGTTG AATGCAAAAA TTATGAGTGA CTGAAATAGA GGAGAAGAAA 
    ATTGGGGATA GAGTTCGATG AATATATGCA ATCATTTAGG ACCGAGAAAT 
    TAANAGAGGG AGTGGGCAAA AGGGACAGNG ACATTCTCTC GGATTTTATT 
    CTTGNATATA ACTAAATTAC AATCCATAAA TTCCAAATGT TTNGGTACAT 
    CNATTATCTT TGCAAATGCA ACAAC

AT5G66350.1

Model type
Protein coding
Short Description
Lateral root primordium (LRP) protein-related
Curator Summary
A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Shi mutant is dominant, has dwarf phenotype. Loss of function mutations have no observable phenotype. Putative zinc finger protein. Involved in the response to gibberellic acid.
Computational Description
SHORT INTERNODES (SHI); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: Lateral root primordium (LRP) protein-related (TAIR:AT3G51060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR