1. Home
  2. Mutant Lines
  3. 13-3464-1

13-3464-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17899649 [Map]; Strand: w
      • AT4G38130.1 - [+] show detail - histone deacetylase 1
        Distance: -158; Region: promoter
      • AT4G38130.2 - [+] show detail - histone deacetylase 1
        Distance: -158; Region: promoter
    Flanking Genome Sequence: 13-3464-1 - 3-prime edge
    ATNAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATAGA 
    TTTGTTACTC TGCGTAAGAC CATTAAGTAA ACGGGCTAAA GGCAACTTAA
    TAGGCCTTAT TTTTAAAACA CATTAAAAGT GGGCCTCATT TTAAACCATT
    ACAGATTAAA AGTGGGCCTT TCCATTATAA AATGAAAGTA GAAAAAGTTG
    GAAGAGATGA GTAAGTAGGC TACAGTTTCA GTCAGAGGTG AAAGAAAATC
    TGAAAGCAAA GCAGAGAGCA GCTCCCTTCC CCTCGGCGAG GAGGAAGGAA
    GAAGAAAGCC AGAGAGAGAG AGAGAGAGAG ATCATCGCAG CTTCTCCTCC
    GACCATTTGA CTGCGACTGT GATTACAACA CACCGTTGAT CCTACNAAAA
    NGGTCAGTCA NACTCTCTTC CTTGTCTGCG TGATTCCATT TTCCGGCGTN
    TGTCTAGCCT CGCCGTCTTT TAATATCTTT CACTCGCCTT CCTGTCTCTT
    CTGCACACTA NATTTGATTT TTTCGTAACT TAAAAAAATG TTGTTGTTGT
    CATTCAAACG CGTCCATGGC TCANCTACTC CGCGGCTAGG GTTTAGTTAT
    CATTTTTTAA TAATATAATT TTTATGGATC GGCGTGCGNG CAGAGGTAAT
    GNATACTGGC GGCAATTCGC TGGCGTCCGG ACCTGATGGT GTGAAGAGGA
    AAGTTTGTTA TTTCTATGAC CCTGAGGGCG GCANTTACTA CTATGGNCAG
    GGNCTTCCCA TGAAGCCCCA TCGATCCGAT GACCCT

AT4G38130.1

Model type
Protein coding
Short Description
histone deacetylase 1
Curator Summary
Encodes a histone deacetylase that enhances AtERF7-mediated transcriptional repression. Binds SIM3 and ERF7. Expressed in the nucleus in most tissues examined and throughout the life of the plant. Involved in jasmonic acid and ethylene dependent pathogen resistance. The sequence in GenBank has 17 AG dinucleotide repeats missing, which is also missing in Ler shotgun sequence from Cereon. Although it is annotated to be in Columbia, the GB sequence is probably not of Columbia origin. Plays a role in embryogenesis as mutants grown at higher temperatures display abnormalities in the organization of the root and shoot. Plant lines expressing an RNAi construct targeted against HDA19 shows some resistance to agrobacterium-mediated root transformation.
Computational Description
histone deacetylase 1 (HD1); CONTAINS InterPro DOMAIN/s: Histone deacetylase (InterPro:IPR003084), Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 6 (TAIR:AT5G63110.1); Has 8765 Blast hits to 8554 proteins in 1452 species: Archae - 219; Bacteria - 3185; Metazoa - 1529; Fungi - 558; Plants - 480; Viruses - 0; Other Eukaryotes - 2794 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38130.2

Model type
Protein coding
Short Description
histone deacetylase 1
Curator Summary
Encodes a histone deacetylase that enhances AtERF7-mediated transcriptional repression. Binds SIM3 and ERF7. Expressed in the nucleus in most tissues examined and throughout the life of the plant. Involved in jasmonic acid and ethylene dependent pathogen resistance. The sequence in GenBank has 17 AG dinucleotide repeats missing, which is also missing in Ler shotgun sequence from Cereon. Although it is annotated to be in Columbia, the GB sequence is probably not of Columbia origin. Plays a role in embryogenesis as mutants grown at higher temperatures display abnormalities in the organization of the root and shoot. Plant lines expressing an RNAi construct targeted against HDA19 shows some resistance to agrobacterium-mediated root transformation.
Computational Description
histone deacetylase 1 (HD1); CONTAINS InterPro DOMAIN/s: Histone deacetylase (InterPro:IPR003084), Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 6 (TAIR:AT5G63110.1); Has 8759 Blast hits to 8549 proteins in 1452 species: Archae - 219; Bacteria - 3192; Metazoa - 1525; Fungi - 536; Plants - 478; Viruses - 0; Other Eukaryotes - 2809 (source: NCBI BLink).
Link
InterPro Scan - TAIR