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13-3473-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 15405623 [Map]; Strand: c
      • AT3G43510.1 - [+] show detail - transposable element gene
        Distance: -245; Region: promoter
      • AT3G43520.1 - [+] show detail - Transmembrane proteins 14C
        Distance: -400; Region: promoter
    Flanking Genome Sequence: 13-3473-1 - 3-prime edge 
    TGAAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCT 
    GCCAATCAGT TACCAAAATA TTCTTTAAAT TGTCCAATTT TTGCTATAAA 
    TCGATGGCAA AATTGTTTGA AATGTTCCGA AATATTGAAA AATATGCCGA 
    AATTATTGGA ACAAGCGGAA TTTAAACTGA GCAAACCGTA TTAATTATTG 
    TTGTTTCAAT TCAGAACACT TCCGAACCGA AATATATCAC TTCAGAACTG 
    AGGAAAACCG TAGTTCAAAT TCGGTTAGAT TTTTTATTAA TCAAACAAAC 
    CGAAATTCCG AACTGACCCG GACCGAAGTA CCGATTGCAA TGCCTAATAA 
    AGTAAGACCT AATGAAAACC GGTTTGCAGA TAAGACCAAT TTAGCCGGTT 
    AAGGTTCATT ATTTGATTAA CGTTTTTTGT TGTTGATTTT CTCCAAAATC 
    AATCAATCAC TAAAATTAGT CGTTAAACAA AAAGCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 15405555 [Map]; Strand: c
      • AT3G43510.1 - [+] show detail - transposable element gene
        Distance: -177; Region: promoter
      • AT3G43520.1 - [+] show detail - Transmembrane proteins 14C
        Distance: -468; Region: promoter
    Flanking Genome Sequence: 13-3473-1 - 5-prime edge 
    CTTGGTGCAC CTCCTCATAT CACCGAACCG GTCACTGATT TCAAAAACAA 
    GTTTCTGAAC GGTTTTAAGA ATACCCAANT TACCAAAATT CCGGTTCGGA 
    TGGGTCCGGT ACATCTGCCC AGGTCTTCGC ATTAGTAAAC GACGTCGTTT 
    TTGGTCTTTC ATCCCAATAT GTATGTGTAG TCTCCCAATA AATCAACGCA 
    GAAAACCAAA ACCCTCCTCA CCGGAGATCC ACCGTCTAAA TCGTCTCTAA 
    AAATGGANAA ATCGTTGCTC GATTCTGGCG AAACAACGGA GATAATTACC 
    ACAGATAAAA ACGAGGAAAC AGNGAAAGAC ACTCTCAGAG AAGTNAAATT 
    TCAGGACATA NACCACGGTG AAGCACCCGT ACCGGAGAAA GTGCCTCCGG 
    CGTATAAAAG AAAAGTTTCC GTTGCTGAAN AAGAACGCTT TCTTTATAAG 
    GTTACGACTT TTGCTTACTC TACTCTCTAT GTTCTATTCT AGTGAATGGN 
    TTTGATTTTC GATTTGTTCT GTGAGATATT TTTCTGGAAT CTGNTTTTAT 
    ATGTNNAATA GNNCTCGGAN ACNAAAGATG TGATGGNTAA TAAATACCAA 
    GGCAAAACTT NTCTATTGNT TGGGAAAAAA NATGNTTNNT AGGNAAAAGA 
    NGCANAATTA NAAGGNNNAN TNTTTGAANA CANNCNNNNN NTTGNTNTTT 
    TTANTNTNAN CAC

AT3G43510.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 2.3e-11 P-value blast match to GB:BAA11674 ORF(AA 1-1338) (Ty1_Copia-element) (Nicotiana tabacum)
Link
InterPro Scan - TAIR

AT3G43520.1

Model type
Protein coding
Short Description
Transmembrane proteins 14C
Computational Description
Transmembrane proteins 14C; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0136, Transmembrane (InterPro:IPR005349); BEST Arabidopsis thaliana protein match is: Transmembrane proteins 14C (TAIR:AT2G26240.1); Has 541 Blast hits to 527 proteins in 134 species: Archae - 4; Bacteria - 94; Metazoa - 236; Fungi - 13; Plants - 153; Viruses - 7; Other Eukaryotes - 34 (source: NCBI BLink).
Link
InterPro Scan - TAIR