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13-3476-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17946114 [Map]; Strand: c
      • AT4G38300.1 - [+] show detail - glycosyl hydrolase family 10 protein
        Distance: -623; Region: promoter
    Flanking Genome Sequence: 13-3476-1 - 5-prime edge 
    CTTTTACCCA CAGATTTATA ACCTTTGAAC TTGTTCATAA CCAGTTATTC 
    TTGGCTTTCC TTTCTTTTGG TAAACTGAAC TTCCATGAAT CTTTATCAAA 
    CATTTTCTGC AGCCTTTTGA CCTATCCATT GAGCTACATA CCTAAGACAA 
    CCTCCATGAA CATAGCTTCA CCAGAAACTA AAAAAAAGGA TGTCACTTTG 
    TCTTTGTAAG CTCAGCTTCT CTTCTATGAG TTATGCTGCA TGCTCTTCAC 
    TGTTTCTTTG ATTCACTCAC ACGTTCTAAT GTATCCGAAT GAGTTTCTGT 
    GACATAACTC TTAAGAAAGT GTGCCAAAAC GTGTGACACA TCTCCTTTCT 
    TCATGTAGCC ACTCAATCTA ATTCTTTTAT TCCCAAAAGA ACCACCAAGA 
    ACTTTTCTTT AATATCTGCA ACCTTGTCCT CTCTTTACAT GGAGCATTCT 
    TCATGTTTTG ATGATGATAT AGCTTAAGCT GATGTATCAC AAAACAATGC 
    CTTAATCTCA GACAATCTCT TGTACTCTCT TGTAGCTGAA ATGCAACTCA 
    TACTTGTCTT GTACCGCTGT TAAGATAAAC AGGACACGCT GCCTAACTCT 
    TCTAGCTAGG AAGACCATCG ACACAATAAT AGTTTACCAT GTTGCATAAN 
    ACACACACTC ATTTNTAACA TCAAAATCGC AAACTGTATT CTTTATGGTG 
    GGT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17946188 [Map]; Strand: c
      • AT4G38300.1 - [+] show detail - glycosyl hydrolase family 10 protein
        Distance: -697; Region: promoter
    Flanking Genome Sequence: 13-3476-1 - 3-prime edge 
    AATGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC 
    GACTCTTACG GATTTGTTTG AAGGTCGTTG ATTGGTTAAG ATATTCAGAA 
    ACGAATTGCA GATCTCTAGA GAATTGCAGG TTTTCGAAAC TAAGTTGCAG 
    ATCCTAGAAT AAGTTGCAGG ATTCTGAATT ATTATGTTTT TTAGGGCTGA 
    GTAAGCTAAG AAGAGGTTAT TGGAGTGATT CAGTGGGATT CTTAGAAGAA 
    GAAAATGGAA GAGACAAGTG CAAGTGCTGC ATGAACTGTC TCAAGGCTAC 
    TCACTTCAAT AATGTGAAAG TGTCATGTAT CTAGTTTGAT AAACGACACA 
    TCTCAATGCT GGTGGCAGTG GCTGAAAAGA AGCTCTAGAA GGAAGCAAAT 
    GCAAGAAATT TAAAACTGCA TTTAGAAGAC NGTAACTAAG GGAGTTTGGA 
    GTTAACCTGN CCTGGCCTCC NTGANAAAAA ATTCCCTTAA NNTACCTNCC 
    NNNCCNGGGG AAAATTNCCC CCNCCCCCNN GGGTTTANNC NNCNGGGGAN 
    NCNGGGGTTT TTTCCCAANN NTTTNNNNNN AAANNTTTNN NNNAAAAANN 
    NNNNGGGGNN NTTTTTNCNC NNCNNNTTTT TNTTNTNTNT TCCCCCCCCN 
    NTNT

AT4G38300.1

Model type
Protein coding
Short Description
glycosyl hydrolase family 10 protein
Computational Description
glycosyl hydrolase family 10 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 10 (InterPro:IPR001000), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 10 protein (TAIR:AT4G38650.1); Has 1908 Blast hits to 1902 proteins in 430 species: Archae - 10; Bacteria - 1128; Metazoa - 20; Fungi - 351; Plants - 265; Viruses - 0; Other Eukaryotes - 134 (source: NCBI BLink).
Link
InterPro Scan - TAIR