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13-3562-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23399661 [Map]; Strand: w
      • AT3G63350.1 - [+] show detail - winged-helix DNA-binding transcription factor family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-3562-1 - 5-prime edge 
    CACAAACCAC ATTGTGTCTT GGAACAGGGG AGGCATCAGT TTTGTCGTGT 
    GGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23399545 [Map]; Strand: w
      • AT3G63350.1 - [+] show detail - winged-helix DNA-binding transcription factor family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-3562-1 - 3-prime edge 
    GGTTTGTGTT TGGATCACCA ACCATCTCGA ACGTCTTTGT TAGAAAAGGA 
    GAAGGCCCTG CTTCCTGCAA TCCCTCCATA GGCACCGGCG GTGGCATTGA 
    CCGTGCTCTG GAGCTTGACG ACGGGTCCAT CTTGTTAGCA ATGCTAATGC 
    TAGAAGTCTA ATGATCTATG ATTGGATTTT TCGTAAATTA TAATCCAAGG 
    AAGGAAACGA TGCATTTGGG GTTCCTGTAT TGGAGAAGAC CAAAACAGCA 
    CAGAACCAAA AGAAGAAAGA GCGGGAAGTG TATTTTTTTC TTTAAAACAG 
    AGTACTCTGC TTTTGCTGGT GGTTAGTTAC TTAGTTTATG GCAGTTGGGG 
    CAGGAAATGT GGCGAANACA ATGGCCACGT AGGTGACTTA AATCCATATA 
    TATATATAGC GGGGAGCTGG TGATCCTTAA AATTCTTTTA GTCACCAAGT 
    GGAGTTCNAA CTTTCTAGAG CTATTTACCA GAGGGAGGAN GGGTGCATAT 
    CTTNTTAAAA AGTTCCGGAA CTTATACTTT TGAGGAGATT AAGGTAAAAT 
    CNTNTGTGGN GGATCACCAN CCCGGGCCGT NNACCACNCG TNNNNNNT

AT3G63350.1

Model type
Protein coding
Short Description
winged-helix DNA-binding transcription factor family protein
Curator Summary
member of Heat Stress Transcription Factor (Hsf) family
Computational Description
AT-HSFA7B; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to high light intensity, response to heat, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: root, pedicel, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: heat shock transcription factor A7A (TAIR:AT3G51910.1); Has 2113 Blast hits to 2100 proteins in 228 species: Archae - 0; Bacteria - 6; Metazoa - 325; Fungi - 481; Plants - 785; Viruses - 0; Other Eukaryotes - 516 (source: NCBI BLink).
Link
InterPro Scan - TAIR