Home
Mutant Lines
13-3565-1

13-3565-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence
1. Chromosome: 2; Position: 886713 [Map]; Strand: w
  - AT2G03020.2 - [+] show detail - Heat shock protein HSP20/alpha crystallin family
    Distance: -2565; Region: intergenic
  - AT2G03030.1 - [+] show detail - Toll-Interleukin-Resistance (TIR) domain family protein
    Distance: -3051; Region: intergenic
2. Chromosome: 2; Position: 896636 [Map]; Strand: w
  - AT2G03040.1 - [+] show detail - emp24/gp25L/p24 family/GOLD family protein
    Distance: -3064; Region: intergenic
  - AT2G03050.1 - [+] show detail - Mitochondrial transcription termination factor family protein
    Distance: 3054; Region: intergenic
Flanking Genome Sequence: 13-3565-1 - 5-prime edge
```
CCTACAGTTG TCTTAAACTT AAGAAAATTT TGTTTAGGAC TAATACATTT 
AATATTTTTA AAAAATATCA TAAATATTTA ATAGATTAAA AAATTAAAAA 
ATTGTAAATA CTCTAATTTG ATTATTTAAA AATAGATATA TAATTAAAAT 
ATTTATAGCA TGTGACATGT TAAACGTAAT GTATTATATG CTTGTTTAAA 
TAAGGTTTGA CACTTCTAAA TATTTTAAAA TTTGATATTG TAAGCAAATT 
TTCATTAGAA TT
```
3 prime edge [+] show sequence
1. Chromosome: 2; Position: 886597 [Map]; Strand: w
  - AT2G03020.2 - [+] show detail - Heat shock protein HSP20/alpha crystallin family
    Distance: -2449; Region: intergenic
  - AT2G03030.1 - [+] show detail - Toll-Interleukin-Resistance (TIR) domain family protein
    Distance: -3167; Region: intergenic
2. Chromosome: 2; Position: 896520 [Map]; Strand: w
  - AT2G03040.1 - [+] show detail - emp24/gp25L/p24 family/GOLD family protein
    Distance: -2948; Region: intergenic
  - AT2G03050.1 - [+] show detail - Mitochondrial transcription termination factor family protein
    Distance: 3170; Region: intergenic
Flanking Genome Sequence: 13-3565-1 - 3-prime edge
```
ACTGTAGGGT CGTCCATACA GAAAATAACA TTTATCACTT TGTTTAGTTG 
GTATATGACC AATCTTAAGT TTGATGCATG ATAAACTGGT AATGGTTTTC 
TACATTTTTT TTTTTANCAT CNAANCAANC TTTNTTAANG GNAATCAAAG 
TNTCCNTGAT TNTCAANGAA ATTNCAAATC CNNCCANTNG TTTTTGTANC 
NAAAAAANGA NNAACCANTC CNTNCCGCNT TNTTAGNCAA GNCCTTTNTN 
ATNTTCGNCN TTNCCGCNAA TTNGGGGNNA CTTTNTNGCT NAGGGATCTT 
NTTNTTTTTN CNGANAAAAN CCCGGTAANN CANTNNAAAG TCNTNTNCAN 
CNANCCNTNT NTTACNTCAN AAAGCTNCCA NCCNGGGCCG TNANCCNCCC 
NNGCCCTTNA
```

AT2G03020.2

Model type: Protein coding
Short Description: Heat shock protein HSP20/alpha crystallin family
Computational Description: Heat shock protein HSP20/alpha crystallin family; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), Small heat shock protein, predicted, plant (InterPro:IPR016952), Peptidase A1 (InterPro:IPR001461), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: Heat shock protein HSP20/alpha crystallin family (TAIR:AT4G16540.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G03030.1

Model type: Protein coding
Short Description: Toll-Interleukin-Resistance (TIR) domain family protein
Computational Description: Toll-Interleukin-Resistance (TIR) domain family protein; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Toll-Interleukin-Resistance (TIR) domain family protein (TAIR:AT2G03300.1); Has 1604 Blast hits to 1539 proteins in 51 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 1599; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G03040.1

Model type: Protein coding
Short Description: emp24/gp25L/p24 family/GOLD family protein
Computational Description: emp24/gp25L/p24 family/GOLD family protein; INVOLVED IN: transport; LOCATED IN: integral to membrane; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038), emp24/gp25L/p24 (InterPro:IPR000348); BEST Arabidopsis thaliana protein match is: emp24/gp25L/p24 family/GOLD family protein (TAIR:AT2G03290.1); Has 637 Blast hits to 637 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 362; Fungi - 29; Plants - 206; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G03050.1

Model type: Protein coding
Short Description: Mitochondrial transcription termination factor family protein
Curator Summary: A locus involved in embryogenesis. Mutations in this locus result in embryo lethality.
Computational Description: EMBRYO DEFECTIVE 93 (EMB93); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cellular response to singlet oxygen, embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G34620.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR