1. Home
  2. Mutant Lines
  3. 13-3577-1

13-3577-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 21429313 [Map]; Strand: c
      • AT3G57870.1 - [+] show detail - sumo conjugation enzyme 1
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 13-3577-1 - 5-prime edge 
    CTGTTGTTTA TAGCTAATTT TACATGTTTC TCTGCTGCAG ACTGATTGGG 
    AAGGTGGATT CTTTCCATTA ACGATGCACT TCAGTGAGGA TTATCCGAGC 
    AAACCTCCGA AATGTAAATT TCCACAAGGG TTTTTCCACC CTAATGTCTA 
    TCCATCTGGA ACTGTCTGTC TCTCTATCCT TAACGAGGAT TATGTAAGTA 
    CTCTACTGTT TCTTTCTTTG CATTTCTCCA TGAGCAAAAG CCAGCTTTAT 
    CCTCAAGCTC TCTTTTGTTA TGTGTATATC CATAGGGATG GAGACCAGCC 
    ATCACCGTGA AGCAGATTCT TGTTGGTATT CAGGATTTAC TTGACACACC 
    GAATCCCGCT GACCCTGCAC AGACAGATGG TTATCATCTC TTCTGTCAGG 
    TACATTTAGA AATGAAAACT CTAAACACAA TATTAGGTTT TGAAACATAG 
    GAAGGAACTA AGTCGAGTGA TTGTTGATGA TTATTGTGCA GGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 21429429 [Map]; Strand: c
      • AT3G57870.1 - [+] show detail - sumo conjugation enzyme 1
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 13-3577-1 - 3-prime edge 
    AACAACAGTA AAGATTGATA TTAGCAATTG CTCTTGCAGT AACACTCTTA 
    TTAGCCATGT CAAAGTAAGA TACACAGCAG AGTTCAGTTT CAATGTCGTA 
    TTCAAGACCA AAATCATATG CACCAATAAA AAAACATCAT ACAAGATAAA 
    CAAGGAGATA GATACACAGC TACTCTTCCC ACTAACATTC ATATTAGATA 
    ATCTTCCACG GCTCTATGTG TAAGCAAATA TGAGAGAATC ATCAAACAGA 
    ATCACAAAGA AAAAGAAGGG AAGAGACTGG TGAAGCT

AT3G57870.1

Model type
Protein coding
Short Description
sumo conjugation enzyme 1
Curator Summary
Encodes a SUMO liagse that directs the attachment of the small protein SUMO to target proteins via an isopeptide bond. This enzyme is localized to the nucleus and plants with reduced levels of this protein show higher sensitivity to ABA in root growth inhibition assays. It has high similarity to the yeast UBC9 SUMO ligase and is sometimes referred to by that name.
Computational Description
sumo conjugation enzyme 1 (SCE1); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquiting-conjugating enzyme 2 (TAIR:AT2G02760.1); Has 9584 Blast hits to 9566 proteins in 388 species: Archae - 0; Bacteria - 0; Metazoa - 4206; Fungi - 2037; Plants - 1834; Viruses - 20; Other Eukaryotes - 1487 (source: NCBI BLink).
Link
InterPro Scan - TAIR