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13-3604-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3015453 [Map]; Strand: w
      • AT1G09330.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -362; Region: promoter
      • AT1G09340.1 - [+] show detail - chloroplast RNA binding
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 13-3604-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCAG CAGGGACTTA ACCAATCAAC CATGGCGAAG 
    ATGATGATGT TGCAACAGCA TCAGCCTTCT TTCTCTCTCC TTACTTCTTC 
    TCTGTCTGAC TTCAATGGCG CTAAGCTCCA TTTACAAGTC CAGGTCTTTT 
    TCATCCTTCG TTCTGACGAC TATCATTATC AATTTTATCA GATGGGTTCT 
    GCTTTTGTGT GTCTGATGAG CCAAAATCCG TTCAGCACAT TTCAAAACTA 
    TTCCTTTTAA AATGGGTTTA AGCT

AT1G09330.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF846, eukaryotic (InterPro:IPR008564); Has 518 Blast hits to 518 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 193; Fungi - 145; Plants - 73; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G09340.1

Model type
Protein coding
Short Description
chloroplast RNA binding
Curator Summary
Encodes CHLOROPLAST RNA BINDING (CRB), a putative RNA-binding protein. CRB is important for the proper functioning of the chloroplast. Mutations in CRB also affects the circadian system, altering the expression of both oscillator and output genes.
Computational Description
chloroplast RNA binding (CRB); FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: in 6 processes; LOCATED IN: in 10 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: chloroplast stem-loop binding protein of 41 kDa (TAIR:AT3G63140.1); Has 5936 Blast hits to 5936 proteins in 1402 species: Archae - 366; Bacteria - 3891; Metazoa - 108; Fungi - 58; Plants - 234; Viruses - 3; Other Eukaryotes - 1276 (source: NCBI BLink).
Link
InterPro Scan - TAIR