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13-3634-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 875785 [Map]; Strand: w
      • AT2G03000.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-3634-1 - 5-prime edge 
    GCAGCGAAGA AGTAGCAAAT ACATTCACTC AAACTTCTTA CATACAATTT 
    GGGAGCCTGT GGGAGACGAA TACAACTCCT TCAACTAGGA GTTGGCCGAC 
    CGTGCCATCA TCAAACTCAC CTAGAGTTTT GCAGACGTCA ATGTCGAGAC 
    GAGGTACCTC CCCAATGTCC TCGTCGACGA GGAGGAATGT GCAATCATCC 
    ATGTCAGGAC GAGAAACCGT ATCATCGTCG ACATCAACGA GTAGCATGCA 
    AACGTCAATG TCAACACCGG AAATTATGCC TACATCATCA AGAAATGTGA 
    TAACAAGGAG CGAAGAAGTA GCAAATACAT TCAGTACTCA AACTCCTTAC 
    ATACAATTTG GGAGGCTGTG GGAGACGAAT ACAACTTCTT CAACTAGGAG 
    TAGGACTACC GTGCCCACAT CGACCACANA CGTGCCTTNA TCAAACTCAT 
    CTAGGGTTTT GCAGACGTCA ATGTCGAAAC GAGGTACCTT CCCAATGTCC 
    TCGTCGACCA GGATGAGTGT GCAAGCGTNA ATGTTGGCAC CAGGAACCGT 
    ATCATCGNCN ACGTNAACAC TANANATTAT GCCTACATCG GCAAGAAANN 
    TGAGTGAAGA ANAANCAAAT NTCATTCCCT CAAACTTCTT ANNTACAATT 
    TGGGAGCTTG GGGGAANACG NTAAAACTGN AACAAANNNN NNNCNGNGTA 
    NNGATGGNGG A

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 875714 [Map]; Strand: w
      • AT2G03000.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-3634-1 - 3-prime edge 
    TTTAAAACGG NAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TGCTTGTTAT CACATTTCTT GATGATGTAG GCATAATTTC CGGGGTTGAC 
    GTAGACGTTT GCATGCTCCT CGTTGATGTC GACGATGGTA CGGTTTCTCG 
    TGCTGACATG GATGCTTGCA CACTCCTCCT CGTCGACGAG GACATTGGCG 
    AGGTACCTCG TCTCGACATT GAGGTCTGCA AAACCCTAGG TGAGTTTGAT 
    GTGGATGATG GCACGTTTGT TGTCGATATG GGCATGATCG CCTTGCTTCT 
    ATTTGAAGCT GCTCTATCCG TAGCGGACTG ATGACGAGCA TTGAAAAAAC 
    GGTCGTCGGG AAAATCTCCT CCAGATGACA TTGAAGTATG TGCAACCCTT 
    GGTGTCATCA AACTCGTAGA TCGCATGTTC GATGTCGATG TTGGCAAGTT 
    TGTTGCCGTA GTTGGAGTTG TTCTATTTGT AACGGAAAGA TATCGATGAT 
    AAAAGAAACG CTCGTCACGC ATATCCGAGG ACATTGCAAC TCAAAACCTA 
    AAGGACAAAA AAAAANCGAA TTGAANTTNT TTTAAAAAAT CAAGGGTTTT 
    TTTNGNANGT CGCNCTCTNT GGTNTTTAAA AAAAATAAAA CNGNTNGANA 
    AGTNNAAANT NTGNAAANCG AAAACCTTTA TAAANAANAN TTTNCCGGCC 
    CNNNNNTNNA AACNTATTTA TGGTTAATAG GTTTTTTTNN AAANNCCNTT 
    TTTGGNNGNN TAAAATCCAC NTTTTGAAAN NACNAGNT

AT2G03000.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G14200.1); Has 30893 Blast hits to 17053 proteins in 804 species: Archae - 45; Bacteria - 3195; Metazoa - 9909; Fungi - 5711; Plants - 4804; Viruses - 543; Other Eukaryotes - 6686 (source: NCBI BLink).
Link
InterPro Scan - TAIR