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13-3641-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4009951 [Map]; Strand: w
      • AT1G11880.1 - [+] show detail - transferases, transferring hexosyl groups
        Distance: 0; Region: intron1 (CDS)
      • AT1G11890.1 - [+] show detail - Synaptobrevin family protein
        Distance: -828; Region: promoter
    Flanking Genome Sequence: 13-3641-1 - 5-prime edge 
    NCTANAANGN ANNCATGGNA CCGNNGGCGC NCAANNTCGG TGNAAAANCA 
    AGNANTGCCT ANCGTAANTG ATNCACCCCN AGNGGGNAAN ANGTNCAAAT 
    TNCANANCCT GTGCCGAGAG AGAAGCGAGA TGAAGAAGGG AAGCANAGGC 
    AAGAAGGCGT AAGTCTGCTC ATACTCATAA CCACACTCGG NGATTCGGAG 
    AAAATACACA CTGTCCCAGA CAACACTGNT TTCAAGGGAT CTCGAAGCTG 
    CATTGGCTAC TATAAATGAA GAAGAATCTT CTTTGTGATA CAAGCAAGGA 
    GGATTGAGTG AAGCGGATGT ATCGTACGGT TGGAGTAAGC TCCGCCACAA 
    AATGGTTAAG AAGAGAACGA GAAGTCGCGA GAAGATGGCG TATTTGATCA 
    AGATGGTTTC TTTCCTTGAT TTCGAGTTTG ATTCCAAAGC T

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4009825 [Map]; Strand: w
      • AT1G11880.1 - [+] show detail - transferases, transferring hexosyl groups
        Distance: 0; Region: exon2 (CDS)
      • AT1G11890.1 - [+] show detail - Synaptobrevin family protein
        Distance: -954; Region: promoter
    Flanking Genome Sequence: 13-3641-1 - 3-prime edge 
    NTCTTCNAGC TGTGATGGTG TTGNCTGGTT ACATTGTCAC CAACTTAGCC 
    TTCATATTTA GCTGCTATCT ATCTATNCAN GTACTTNTTT TAACATTGAT 
    CCAATATCCG ATTATTNTGN CTCGAAATAA GTCAAGTCAT GAGTTTTGGA 
    GCTCTACAAG CTAATGGTGT TTGCTATTCA CCGTGTCTTA CACCAGTCGT 
    TGCTAACAGG GTTTCAGTTA TTATCTTGAA GGACACTGAA GCAGCATTCA 
    GAGCTTCGAT TATCTTCTGT TTCAATCCGG CGTCCATATT CTATTCGTCA 
    ATGTAATGAA TT

AT1G11880.1

Model type
Protein coding
Short Description
transferases, transferring hexosyl groups
Computational Description
transferases, transferring hexosyl groups; FUNCTIONS IN: transferase activity, transferring hexosyl groups; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: integral to membrane, endoplasmic reticulum membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Mannosyltransferase, PIG-V (InterPro:IPR007315); Has 490 Blast hits to 469 proteins in 237 species: Archae - 6; Bacteria - 111; Metazoa - 123; Fungi - 146; Plants - 40; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G11890.1

Model type
Protein coding
Short Description
Synaptobrevin family protein
Curator Summary
member of SEC22 Gene Family
Computational Description
SECRETION 22 (SEC22); FUNCTIONS IN: transporter activity; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: Golgi apparatus, endoplasmic reticulum, plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT5G52270.1); Has 1577 Blast hits to 1577 proteins in 232 species: Archae - 0; Bacteria - 0; Metazoa - 548; Fungi - 342; Plants - 449; Viruses - 0; Other Eukaryotes - 238 (source: NCBI BLink).
Link
InterPro Scan - TAIR