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13-3644-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22333834 [Map]; Strand: c
      • AT5G55040.1 - [+] show detail - DNA-binding bromodomain-containing protein
        Distance: -2021; Region: intergenic
      • AT5G55050.1 - [+] show detail - GDSL-like Lipase/Acylhydrolase superfamily protein
        Distance: -3867; Region: intergenic
    Flanking Genome Sequence: 13-3644-1 - 5-prime edge 
    CCAATCACCA TTATCATCAG ATTATACTTG CTCCATTAAT ATTTTTTCTT 
    TTCTAGAATG CTTTAGCTAA AACAACAAGA TTATAAAATT AACCATTTAT 
    TTATGCATTT CCTATATAAT AATATAGTTC AACCAAACAA AATACTGGAA 
    TCATATAAAT AGTTTCGAAA TATAAAAAAT AATAGATCAG ATAAACATTT 
    TGAAAAACTA TCAAACAGAT TTAAACCAAA AAAAACACCA ATAAATCTCT 
    GNGTTACTGG GCTGGTTTTT AAGATTATCT CTCAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22333950 [Map]; Strand: c
      • AT5G55040.1 - [+] show detail - DNA-binding bromodomain-containing protein
        Distance: -2137; Region: intergenic
      • AT5G55050.1 - [+] show detail - GDSL-like Lipase/Acylhydrolase superfamily protein
        Distance: -3751; Region: intergenic
    Flanking Genome Sequence: 13-3644-1 - 3-prime edge 
    GTGATTGGCG GCAACAATCA AAAGATTTAT AATTTCATAC GTTGGTTGCA 
    TGTATACCAG ATCAATCATT AATCAAAAAT TCAACGTATA AAGTATAAAC 
    GTAATAGATA AAGTAATCGT CATCTTTGTA AACTAACCGA TATGAAATGT 
    TTCGTCGTCG ACAATCCCAC ATTTTACGGT GAATCTATTT CCCAAGGTAC 
    CACCTTATCT GAATT

AT5G55040.1

Model type
Protein coding
Short Description
DNA-binding bromodomain-containing protein
Computational Description
DNA-binding bromodomain-containing protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bromodomain, conserved site (InterPro:IPR018359), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: DNA-binding bromodomain-containing protein (TAIR:AT1G20670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G55050.1

Model type
Protein coding
Short Description
GDSL-like Lipase/Acylhydrolase superfamily protein
Computational Description
GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, lipase activity, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT3G50400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR