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13-3652-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3080722 [Map]; Strand: w
      • AT1G09530.2 - [+] show detail - phytochrome interacting factor 3
        Distance: 1183; Region: intergenic
      • AT1G09540.1 - [+] show detail - myb domain protein 61
        Distance: -5437; Region: intergenic
    Flanking Genome Sequence: 13-3652-1 - 5-prime edge 
    GNGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC ATAGGCTATG ATTATGTCTC TTCTTCTCTC CTTTCTTACC 
    AGTTAGATTG GGCCATATTA GAGAGAAATT CAACCATACA AGCCCTCTTT 
    TCTCACTTTT AATCAAATCT GTAATATTAT TTGCCTTCTT TTCTAAGTTT 
    GATATTTTTC TCGACCACAA AATCACAAAA CACAAATCAA ATGATCAGTT 
    TTGGAAAAGC AAATGAGGCA AGCAATTAGT AAAAATAGCA TAACCACTTG 
    GGTGTTTAAT TTTTTTC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3057651 [Map]; Strand: w
      • AT1G09470.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: coty...
        Distance: -677; Region: promoter
      • AT1G09470.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; BEST Arabidopsis t...
        Distance: -208; Region: promoter
      • AT1G09480.1 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: -324; Region: promoter
    Flanking Genome Sequence: 13-3652-1 - 3-prime edge 
    TNAAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCT 
    GGCCAGATGC GTAGGTTAGC TACGGATTCG TTACTTTAAA TGACACAAAA 
    TTCGAAGCCC TAGGCTCGGT AACTCCGAAG CTAAATATTT TAGTCACTTT 
    CCTTAAATGA TCTCTCATCC GAACCTAACG GATAGGGACC CCATCCTCCA 
    GGTTTCATTT TCACTGTCAC TTTCCTCCTC TGGAGAAATC ACGAACTCGA 
    ACAAATCTGC AAATTGATTC TTCTTCCTAC CAAACCCAGA AACCTAATAT 
    TTCCAACCGT TCGATGGAGA CTGGTGGGTC GCGAGAAAGT TTGGATTTTT 
    AGGGTTTGAA AATTAAAAAA ATCCTGTAAG AGATTTTGAA TTTTTAAAAA 
    GGTCACGTTT TTTTGGCTGT ATACTTGTAA AGTATTCGTC TTTATCAGAG 
    TTTATTTATT GATGTGAAAG GGACGACACA AGTTTCTTTG TCTCTTTTGC 
    GTATTCCCTA CCTCGATAAT GGCTGTTATT TATAAGAAAT TGATTGTTAC 
    AAACAAGATT TAGAGGATTT AATTCTTGTG GACATATTTG AATGATTTCA 
    CATTCTTTAA CTATACTGAG ATTGGACATT TATGTGTTTC ATTCGTTTAT 
    GTACAGGGTC ACGTGAAGAA CATGAATAGC TGCTTCCTTT TACGTTTTTG 
    AATTTTGGGG TTTTCTGGAN AAGTTATCTG TCTAGATTAA AGAACAGAGC 
    GGGGATNTTC CAGTTTCANA AAATGCN

AT1G09470.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: cotyledon; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26770.1); Has 55019 Blast hits to 30094 proteins in 2088 species: Archae - 730; Bacteria - 6553; Metazoa - 28961; Fungi - 4800; Plants - 2559; Viruses - 111; Other Eukaryotes - 11305 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G09470.2

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26770.1).
Link
InterPro Scan - TAIR

AT1G09480.1

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Curator Summary
similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase
Computational Description
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: alcohol dehydrogenase (NAD) activity, cinnamyl-alcohol dehydrogenase activity; INVOLVED IN: lignin biosynthetic process, cellular metabolic process, metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT1G09490.1); Has 11337 Blast hits to 11295 proteins in 1830 species: Archae - 188; Bacteria - 4702; Metazoa - 514; Fungi - 973; Plants - 2502; Viruses - 52; Other Eukaryotes - 2406 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G09530.2

Model type
Protein coding
Short Description
phytochrome interacting factor 3
Curator Summary
Transcription factor interacting with photoreceptors phyA and phyB. Forms a ternary complex in vitro with G-box element of the promoters of LHY, CCA1. Acts as a negative regulator of phyB signalling. It degrades rapidly after irradiation of dark grown seedlings in a process controlled by phytochromes. Does not play a significant role in controlling light input and function of the circadian clockwork. Binds to G- and E-boxes, but not to other ACEs. Binds to anthocyanin biosynthetic genes in a light- and HY5-independent fashion. PIF3 function as a transcriptional activator can be functionally and mechanistically separated from its role in repression of PhyB mediated processes.
Computational Description
phytochrome interacting factor 3 (PIF3); CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: phytochrome interacting factor 3-like 1 (TAIR:AT2G46970.1); Has 4326 Blast hits to 4310 proteins in 315 species: Archae - 0; Bacteria - 2; Metazoa - 732; Fungi - 183; Plants - 3377; Viruses - 7; Other Eukaryotes - 25 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G09540.1

Model type
Protein coding
Short Description
myb domain protein 61
Curator Summary
Encodes putative transcription factor. Mutants lack of mucilage extrusion from the seeds during imbibition. Reduced quantities of mucilage are deposited during the development of the seed coat epidermis in myb61 mutants. Expressed in guard cells,loss of function mutations show an increase in stomatal pore opening suggesting a role in ABA independent regulation of stomatal pore size.
Computational Description
myb domain protein 61 (MYB61); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 50 (TAIR:AT1G57560.1); Has 8976 Blast hits to 8269 proteins in 475 species: Archae - 0; Bacteria - 0; Metazoa - 766; Fungi - 514; Plants - 5880; Viruses - 4; Other Eukaryotes - 1812 (source: NCBI BLink).
Link
InterPro Scan - TAIR