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13-3690-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19357903 [Map]; Strand: c
      • AT2G47160.1 - [+] show detail - HCO3- transporter family
        Distance: 0; Region: exon12 (CDS)
      • AT2G47160.2 - [+] show detail - HCO3- transporter family
        Distance: 0; Region: exon11 (CDS)
    Flanking Genome Sequence: 13-3690-1 - 5-prime edge
    GATAAACTAA CAAAATCGGT TATACGATAA CGGTCGGTAC GGGATTTTCC 
    CATCCTACTT TCATCCGGTG ACAAGTTCAA GTTCGACTCC AGTCAATAAT
    CGGAGTTTGT CACAAGTGTT TAGTCCAAGA GTGAGTGGAA TCAGGTTGGG
    TCAGATGAGT CCTCGAGTCG TCGGGAATAG TCCAAAGCCG GCGAGTTGTG
    GGAGGAGTCC CTTGAACCAG TCGTCATCGA ACTGAGATTA TATATTCAGG
    AAGCT
  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19357919 [Map]; Strand: c
      • AT2G47160.1 - [+] show detail - HCO3- transporter family
        Distance: 0; Region: exon12 (CDS)
      • AT2G47160.2 - [+] show detail - HCO3- transporter family
        Distance: 0; Region: exon11 (CDS)
    Flanking Genome Sequence: 13-3690-1 - 3-prime edge
    ATGAAAACGG TAGCAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC 
    CTTCGTGTGT CTAAACTCTC CTCTGCTTCG GGTCATAACC TCATCAAGAA
    TCTCCAAATC TCCCGGATAC GATGTTGTGG ATC

AT2G47160.1

Model type
Protein coding
Short Description
HCO3- transporter family
Curator Summary
Boron transporter. Protein accumulates in shoots and roots under conditions of boron deficiency and is degraded within several hours of restoring boron supply. Localized to the plasma membrane under B limitation, and to the cytoplasm after B application before degradation. Protein is transferred via the endosomes to the vacuole for degradation. Localized to the inner plasma membrane domain in the columella, lateral root cap, epidermis, and endodermis in the root tip region, and in the epidermis and endodermis in the elongation zone. Under high-boron is transported to the vacuole for degradation.
Computational Description
REQUIRES HIGH BORON 1 (BOR1); CONTAINS InterPro DOMAIN/s: Bicarbonate transporter, eukaryotic (InterPro:IPR003020), Bicarbonate transporter, C-terminal (InterPro:IPR011531); BEST Arabidopsis thaliana protein match is: HCO3- transporter family (TAIR:AT3G62270.1); Has 2647 Blast hits to 1412 proteins in 196 species: Archae - 0; Bacteria - 8; Metazoa - 1975; Fungi - 323; Plants - 233; Viruses - 2; Other Eukaryotes - 106 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47160.2

Model type
Protein coding
Short Description
HCO3- transporter family
Curator Summary
Boron transporter. Protein accumulates in shoots and roots under conditions of boron deficiency and is degraded within several hours of restoring boron supply. Localized to the plasma membrane under B limitation, and to the cytoplasm after B application before degradation. Protein is transferred via the endosomes to the vacuole for degradation. Localized to the inner plasma membrane domain in the columella, lateral root cap, epidermis, and endodermis in the root tip region, and in the epidermis and endodermis in the elongation zone. Under high-boron is transported to the vacuole for degradation.
Computational Description
REQUIRES HIGH BORON 1 (BOR1); CONTAINS InterPro DOMAIN/s: Bicarbonate transporter, eukaryotic (InterPro:IPR003020), Bicarbonate transporter, C-terminal (InterPro:IPR011531); BEST Arabidopsis thaliana protein match is: HCO3- transporter family (TAIR:AT3G62270.1); Has 2632 Blast hits to 1400 proteins in 192 species: Archae - 0; Bacteria - 6; Metazoa - 1971; Fungi - 316; Plants - 233; Viruses - 2; Other Eukaryotes - 104 (source: NCBI BLink).
Link
InterPro Scan - TAIR