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13-3724-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23452108 [Map]; Strand: w
      • AT3G63510.1 - [+] show detail - FMN-linked oxidoreductases superfamily protein
        Distance: 0; Region: intron9 (CDS)
      • AT3G63510.2 - [+] show detail - FMN-linked oxidoreductases superfamily protein
        Distance: 0; Region: intron9 (CDS)
      • AT3G63520.1 - [+] show detail - carotenoid cleavage dioxygenase 1
        Distance: -803; Region: promoter
    Flanking Genome Sequence: 13-3724-1 - 5-prime edge 
    GACGCTAGGA CATGTTGACA CTGCAGTTTA TGGTGTACCA AGCAGTGGCC 
    TTACACGCCG ACAGGTTCCG TGGAAATATT CAGCTTTTGA GATGCTTTGT 
    CTGTCAAACT TATCAATAAG CTAACTAAAA TCTGCAGTGT TGTTGGGCAG 
    GTTCTTGAGC AATATCAAGT ATATGGAGAT TCTGTGTTAG GAACACATGG 
    AAACCGGGGG AAGGGCCCTA AATGGTTGAG GGGATTTTTG GGTGGAAAGG 
    TAAGGTGTNG GTTTAAAACA ANAAAACCTG TAGGGGTTTN AAAAAAAAAA 
    AA

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23451992 [Map]; Strand: w
      • AT3G63510.1 - [+] show detail - FMN-linked oxidoreductases superfamily protein
        Distance: 0; Region: intron8 (CDS)
      • AT3G63510.2 - [+] show detail - FMN-linked oxidoreductases superfamily protein
        Distance: 0; Region: intron8 (CDS)
      • AT3G63520.1 - [+] show detail - carotenoid cleavage dioxygenase 1
        Distance: -919; Region: promoter
    Flanking Genome Sequence: 13-3724-1 - 3-prime edge 
    CTAGCGTCTG CCATGGGCTG TCAAGGATAG ACAGCGAGTC AAGAAAAGGG 
    GTCTGATAAG AGCTCAGATC AATCGAGCTA AATTTCACAT ACTTGTTGTA 
    TGCAGCACGT CCTACCATGA CTCCATGAGC TCCTTCCTTC AGTGCAGCGT 
    TTACCTTACA ATCACAGAAA TTTTATCAGT CTTACCCTGG TAGTGCAGAA 
    AGAAAGCTAG TCTCTGATAT CCAAGATTGG TGACCTTTGA AACAGAAGTA 
    ATGCCTCCAT TAATAGTGAA TCTCAAGTCC GGGAAGTCAC GCACGAGGGC 
    ATAGTAATAC TCATACCTGA ACTACGCCCA TAAACAGGTG ACCTTAAAGA 
    AACAAATAGA TCATACACAA TTGCAGGTAA GCAAGAGGCA AGTTACGGTA 
    AACAAACTTT AGAGGTGGGA TTCTCCGGTT ATCAGCAGGG CTTATCCCAC 
    CGAGCAGTGC CTTGCGTGAA TGTACAATGA AATGTCTGGT AGGTGATAGA 
    GTAGAAACCT TGTAGATAAA GTCACCTAAN AGTAAAGGAA AAGCAGTATT 
    AGAGCGTAGT GGCAAATCCA TACGAGACTT TAGAAAAACA GAAAGCAAAA 
    ACAACTCACA GAGCTCATCA TACGAATCAT GATTGGCTAC ACCAATTCGA 
    CATTTCACAG TAACAGGGAC GTTGGTATTG GCAGCATGGC AGANATTGNC 
    TNTCCAACAA GCTN

AT3G63510.1

Model type
Protein coding
Short Description
FMN-linked oxidoreductases superfamily protein
Computational Description
FMN-linked oxidoreductases superfamily protein; FUNCTIONS IN: tRNA dihydrouridine synthase activity, FAD binding, catalytic activity; INVOLVED IN: regulation of nitrogen utilization, tRNA processing, oxidation reduction, metabolic process; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), tRNA-dihydrouridine synthase (InterPro:IPR001269); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT5G47970.2); Has 11920 Blast hits to 11916 proteins in 2583 species: Archae - 58; Bacteria - 8071; Metazoa - 278; Fungi - 218; Plants - 160; Viruses - 0; Other Eukaryotes - 3135 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63510.2

Model type
Protein coding
Short Description
FMN-linked oxidoreductases superfamily protein
Computational Description
FMN-linked oxidoreductases superfamily protein; FUNCTIONS IN: tRNA dihydrouridine synthase activity, FAD binding, catalytic activity; INVOLVED IN: regulation of nitrogen utilization, tRNA processing, oxidation reduction, metabolic process; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), tRNA-dihydrouridine synthase (InterPro:IPR001269); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT5G47970.2); Has 11664 Blast hits to 11660 proteins in 2553 species: Archae - 58; Bacteria - 8007; Metazoa - 234; Fungi - 152; Plants - 146; Viruses - 0; Other Eukaryotes - 3067 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63520.1

Model type
Protein coding
Short Description
carotenoid cleavage dioxygenase 1
Curator Summary
Encodes a protein with 9-cis-epoxycarotenoid dioxygenase activity. The enzyme was shown to act on a variety of carotenoid including β-carotene, lutein, zeaxanthin, and all-trans-violaxanthin. When those compounds are used as substrates, the major reaction product detected is a C14 dialdehyde: 4,9-dimethyldodeca-2,4,6,8,10-pentaene-1,12-dial. The enzyme did not cleave as efficiently carotenoids containing 9-cis-double or allenic bonds.
Computational Description
carotenoid cleavage dioxygenase 1 (CCD1); FUNCTIONS IN: 9-cis-epoxycarotenoid dioxygenase activity; INVOLVED IN: response to water deprivation, carotene catabolic process, xanthophyll catabolic process, carotenoid catabolic process; LOCATED IN: plasma membrane, vacuole, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carotenoid oxygenase (InterPro:IPR004294); BEST Arabidopsis thaliana protein match is: nine-cis-epoxycarotenoid dioxygenase 4 (TAIR:AT4G19170.1); Has 2926 Blast hits to 2896 proteins in 500 species: Archae - 16; Bacteria - 808; Metazoa - 317; Fungi - 194; Plants - 866; Viruses - 0; Other Eukaryotes - 725 (source: NCBI BLink).
Link
InterPro Scan - TAIR