1. Home
  2. Mutant Lines
  3. 13-3772-1

13-3772-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23452711 [Map]; Strand: w
      • AT3G63510.1 - [+] show detail - FMN-linked oxidoreductases superfamily protein
        Distance: 0; Region: exon12 (3UTR)
      • AT3G63510.2 - [+] show detail - FMN-linked oxidoreductases superfamily protein
        Distance: 0; Region: exon12 (3UTR)
      • AT3G63520.1 - [+] show detail - carotenoid cleavage dioxygenase 1
        Distance: -200; Region: promoter
    Flanking Genome Sequence: 13-3772-1 - 5-prime edge 
    CCCACCATAC GAAGCTGGAG AAGAAATCAT CTTATGCGCT TAGTTGTCGT 
    TTGTAATCTG TGTTTGTGAT TGTCTCTGTC GATTAAAATT GTAAATTGAA 
    CGGGGCTTAC TTTCAAGTGG TTGTTAGTCT TGGGCTCGTG TATGGGCTTT 
    TTTGTTATTT TTTTTGTTTG GGCCGGAAAT ATAACTGGGT CCATCATCTC 
    AAGAAAAAAG ATTCCGTTGC GACGTGGCAG CGTTTCCGCC AAGACGCGGG 
    CCATATTATC TGGTCTCAAA TCACCTCCTC CTTGCAGCAA AACAAACAAT 
    CATGGCGGAN AAACTCAGTG ATGGCAGCAT CATCATCTCA GTCCATCCTA 
    NACCCTCCAA GGGTTTCTCC TCNAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23452595 [Map]; Strand: w
      • AT3G63510.1 - [+] show detail - FMN-linked oxidoreductases superfamily protein
        Distance: 0; Region: exon12 (CDS)
      • AT3G63510.2 - [+] show detail - FMN-linked oxidoreductases superfamily protein
        Distance: 0; Region: exon12 (CDS)
      • AT3G63520.1 - [+] show detail - carotenoid cleavage dioxygenase 1
        Distance: -316; Region: promoter
    Flanking Genome Sequence: 13-3772-1 - 3-prime edge 
    ATGGTGGGGG CAATACATTG TGCACATCTG CGAACACATC TTCGTCTCCG 
    CTCTCTGGAC TCCCAGATAT GGGTGAATCT AAGACACAGT CCGGGATCGC 
    CCTCAAGCT

AT3G63510.1

Model type
Protein coding
Short Description
FMN-linked oxidoreductases superfamily protein
Computational Description
FMN-linked oxidoreductases superfamily protein; FUNCTIONS IN: tRNA dihydrouridine synthase activity, FAD binding, catalytic activity; INVOLVED IN: regulation of nitrogen utilization, tRNA processing, oxidation reduction, metabolic process; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), tRNA-dihydrouridine synthase (InterPro:IPR001269); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT5G47970.2); Has 11920 Blast hits to 11916 proteins in 2583 species: Archae - 58; Bacteria - 8071; Metazoa - 278; Fungi - 218; Plants - 160; Viruses - 0; Other Eukaryotes - 3135 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63510.2

Model type
Protein coding
Short Description
FMN-linked oxidoreductases superfamily protein
Computational Description
FMN-linked oxidoreductases superfamily protein; FUNCTIONS IN: tRNA dihydrouridine synthase activity, FAD binding, catalytic activity; INVOLVED IN: regulation of nitrogen utilization, tRNA processing, oxidation reduction, metabolic process; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), tRNA-dihydrouridine synthase (InterPro:IPR001269); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT5G47970.2); Has 11664 Blast hits to 11660 proteins in 2553 species: Archae - 58; Bacteria - 8007; Metazoa - 234; Fungi - 152; Plants - 146; Viruses - 0; Other Eukaryotes - 3067 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63520.1

Model type
Protein coding
Short Description
carotenoid cleavage dioxygenase 1
Curator Summary
Encodes a protein with 9-cis-epoxycarotenoid dioxygenase activity. The enzyme was shown to act on a variety of carotenoid including β-carotene, lutein, zeaxanthin, and all-trans-violaxanthin. When those compounds are used as substrates, the major reaction product detected is a C14 dialdehyde: 4,9-dimethyldodeca-2,4,6,8,10-pentaene-1,12-dial. The enzyme did not cleave as efficiently carotenoids containing 9-cis-double or allenic bonds.
Computational Description
carotenoid cleavage dioxygenase 1 (CCD1); FUNCTIONS IN: 9-cis-epoxycarotenoid dioxygenase activity; INVOLVED IN: response to water deprivation, carotene catabolic process, xanthophyll catabolic process, carotenoid catabolic process; LOCATED IN: plasma membrane, vacuole, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carotenoid oxygenase (InterPro:IPR004294); BEST Arabidopsis thaliana protein match is: nine-cis-epoxycarotenoid dioxygenase 4 (TAIR:AT4G19170.1); Has 2926 Blast hits to 2896 proteins in 500 species: Archae - 16; Bacteria - 808; Metazoa - 317; Fungi - 194; Plants - 866; Viruses - 0; Other Eukaryotes - 725 (source: NCBI BLink).
Link
InterPro Scan - TAIR