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13-3779-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 74870 [Map]; Strand: w
      • AT2G01060.1 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: 0; Region: exon2 (CDS)
      • AT2G01060.2 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: 0; Region: exon2 (5UTR)
      • AT2G01070.1 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: -650; Region: promoter
      • AT2G01070.2 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: -650; Region: promoter
    Flanking Genome Sequence: 13-3779-1 - 5-prime edge 
    GTGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT AACTAGAATT GGGGCCTCCG TTGTCTGCTT 
    CCATCAGGGC TAAGATATAA ACACGATAAA GGGAAAGTAA TGAGTAGTGG 
    CAAAGCTAGG AAATGATAAC ATATGAGGAC NTGGCCAGAG AGAAAGAGAT 
    AGAAATGGAA ACAAGGAAGA CGAAATAGCG CCCAGAATTA GCTAGTAAAA 
    ACAGTCCAAG TCAAGTTTAA GACTTGCTCC GGCAGATCCA CCACAGGACA 
    CCAAAATCAG AGACATGTTC ACTAAAATCG GAGGAATTTG TCGCCGAGAA 
    AGCAAAAAGA AAACACAATC CAAGGTTATG GAATCTACGA ACCTGTGGGT 
    GGTGGATCTA TACACGACGC CCCTCCATTT TCGGAACTTG CTCTTCTCCA 
    AGCTAAATCT TATCTGAAAT AGAAGATATT GTGTTACAGA CTAGTTTACT 
    GAGTCCGGTG GGTTACAGGG CGGGCGGCGA TGGAGCAGAG TCCTCCTCAA 
    AAAAATTCCA GTCTTCTTCT TATCGCTCGA TCGACGAATT

AT2G01060.1

Model type
Protein coding
Short Description
myb-like HTH transcriptional regulator family protein
Computational Description
myb-like HTH transcriptional regulator family protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G04450.1); Has 1678 Blast hits to 1660 proteins in 60 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 1660; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01060.2

Model type
Protein coding
Short Description
myb-like HTH transcriptional regulator family protein
Computational Description
myb-like HTH transcriptional regulator family protein; BEST Arabidopsis thaliana protein match is: myb-like HTH transcriptional regulator family protein (TAIR:AT3G13040.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01070.1

Model type
Protein coding
Short Description
Lung seven transmembrane receptor family protein
Computational Description
Lung seven transmembrane receptor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: Lung seven transmembrane receptor family protein (TAIR:AT1G72480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01070.2

Model type
Protein coding
Short Description
Lung seven transmembrane receptor family protein
Computational Description
Lung seven transmembrane receptor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: Lung seven transmembrane receptor family protein (TAIR:AT1G72480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR