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13-3790-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 158270 [Map]; Strand: w
      • AT1G01430.1 - [+] show detail - TRICHOME BIREFRINGENCE-LIKE 25
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-3790-1 - 5-prime edge 
    TTNAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCAGCCAA TGGTTGTGAT GTTTGCTGGG GAATCGACAG 
    AGGCTGGAGT TTGAGTGATG GCAGTGAGAC CTGAAGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 186750 [Map]; Strand: c
      • AT1G01500.1 - [+] show detail - Erythronate-4-phosphate dehydrogenase family protein
        Distance: 0; Region: exon2 (3UTR)
      • AT1G01510.1 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: -461; Region: promoter
    Flanking Genome Sequence: 13-3790-1 - 3-prime edge 
    CCTGTNNGNG TCCTTTCGAA TATATATATN TATATTCGGC TCTGCTCATA 
    TACTATAGTA GCACAAAAGA NAGTTCCCAN CTGGCTCCAN TCATGNCTCT 
    TTTGCTCTTT CTNACTCTCA AGTNTGTCTN TGTCGATCGC NCTCGNCGTA 
    GANAGANATC GNGTGTNGTT GGTCGNTGGC GTGACACTCA TGGAAGTTTG 
    TCGCTTCGTG ATTAGNGGGC ATNGAAATAT TGTAGGAANG AGGGAATGCA 
    CNTGTGTCNN CANGNATTCA ANACTCATGT CATGCAANTN ATAAATTANA 
    TTATNGACAA NTNGCACAAG TGGAAGACGG ANTCTGGNCT CGCTANATGT 
    CTANCNNATN ACNTGTTATA GNGNGAGCAT GCCNATNGNA NATTNANAGA 
    ACATTNANNA TNTGTCCNTA TANTNTAGGN GNCNCGGAAT NTGNTTANAN 
    ATNNATANTT CNCCCCNNAA NAANAANANA GGTTACATNA AGATNCCCAT 
    TCCATGATGN TCCNAAGATN ATCACTGACT CCAAANGATT NNCNAGACAA 
    AAANAGNGGA GAGACTCANA NTGNNTAAAT CAGANATNAA GGCNNGTCNA 
    AACTCACCNT CACNAGGNGA TTNTCTCAAT TATAACATNC GGCNCTGTAG 
    AGGATAGACC CCATANAACA GAANNGANCN TCATCNNCNT GNANGNGNGC 
    GAAAACGACC NTGGCACAAG TNGGGNGG

AT1G01430.1

Model type
Protein coding
Short Description
TRICHOME BIREFRINGENCE-LIKE 25
Curator Summary
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Computational Description
TRICHOME BIREFRINGENCE-LIKE 25 (TBL25); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 26 (TAIR:AT4G01080.1); Has 1353 Blast hits to 1335 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 1340; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G01500.1

Model type
Protein coding
Short Description
Erythronate-4-phosphate dehydrogenase family protein
Computational Description
Erythronate-4-phosphate dehydrogenase family protein; BEST Arabidopsis thaliana protein match is: Erythronate-4-phosphate dehydrogenase family protein (TAIR:AT1G19400.2); Has 143 Blast hits to 143 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G01510.1

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Curator Summary
Encodes a homolog of human CtBP. Mutant has longer and thicker leaves than wild type. Involved in controlling polar cell expansion in the leaf width direction.
Computational Description
ANGUSTIFOLIA (AN); CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: D-isomer specific 2-hydroxyacid dehydrogenase family protein (TAIR:AT1G12550.1); Has 20556 Blast hits to 20427 proteins in 2617 species: Archae - 372; Bacteria - 13694; Metazoa - 624; Fungi - 929; Plants - 529; Viruses - 5; Other Eukaryotes - 4403 (source: NCBI BLink).
Link
InterPro Scan - TAIR