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13-3818-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1237754 [Map]; Strand: c
      • AT1G04540.1 - [+] show detail - Calcium-dependent lipid-binding (CaLB domain) family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-3818-1 - 5-prime edge 
    TTTGTTGCTA TTTAAATGCA AATGTTGTAG ATGATGATCT TCTTCTCCGA 
    GCAAATCTCT GTATCCCACA GCAGATGAAT CCATATGCGT ATAAAGCGGC 
    ATACTCCGCA TAGAACCATC AATTAATCCA ACACCAATGT TCAAAATCCC 
    CTGAGGTCGA CCTGACGTGC NANAAACTTG AAGCGCAACA AATCTCATTC 
    CTGGAGGTGG GGTACGACGA TATTCATTGT TGCTGGTTCT GTATCCTGGA 
    CGGCGATTAG GAGGAATGAG GTTGCTAATG AGGACACGAA CTGTTCCTAC 
    ATGAACATCT CTGAACCAAT GCAAGGCGTA TATTTCGATA ACCACTGCTG 
    AAGTATCAGC GTAGAGAAAT TCTTCGTTGA CTCTGAATAC GAATTTGTCG 
    TTCCAAGTTG GGTTTGTTCC GCCATTGTAG TCGACACGGG TGGTAAGTTT 
    ACGTTCGGAA TGAACCCAAG CAACCGCATA AGTCTTTGTC TTGCGTGCGA 
    CGGGAGCCAA GTCCTGAGCT GATATTATGT TAAGTTCTAG CAACTGAAAC 
    GATGGGAACA TCATCGACAT TGTGGATCAA TAGAGTGATT TTCATTAAAA 
    TCTTTTTGTT GGATTCGAGG GGACNGANAA TTGGAGAGGG ANAAAAANAT 
    NTTTNNANAN AGTCCTNGTG NNAAATTTTT GTNNNTTTNT TATAANNNAA 
    ANA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1237826 [Map]; Strand: c
      • AT1G04540.1 - [+] show detail - Calcium-dependent lipid-binding (CaLB domain) family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-3818-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCA 
    AAGGGAGCTC AAAGAATCCA CAATCTCCAT CTTCTCGACA GTACCAATCC 
    GTAATCTCAA GGCCTGAGCT CCGTCGTACG AAGAGCGATA CAAGTTCTAT 
    GGTTGTTTCG GATCTTCTTA GCAGGGCTGA ACGGAGTCGT TTAGCTAATA 
    GACAACCAGC GAGTGCAATA GTGAGCAGTG AATCTGAAAC TCTTCCCACC 
    ACGACAGATT CTGATGAGAA AAAATCGAGT GAGTATACAC CTCCTAGTAA 
    AAACCTTAGA GTTCCAAGGC AACGATACAA TTCCATTGAA TCAGATCTCA 
    TAAATCCGTC GCCAATGGAG AAACCCCATG TGGTAGTGTC GAGAAGGGAG 
    AGACACGATG TTATGCCGTA TAGTTCGTAT CAACAATCAG GTAAGACACC 
    GAGGAAGAAG ACAAGGATCG AGAAACAAAG ATCAGTGAAA GCT

AT1G04540.1

Model type
Protein coding
Short Description
Calcium-dependent lipid-binding (CaLB domain) family protein
Computational Description
Calcium-dependent lipid-binding (CaLB domain) family protein; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT2G33320.1); Has 556 Blast hits to 454 proteins in 75 species: Archae - 0; Bacteria - 32; Metazoa - 92; Fungi - 46; Plants - 336; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).
Link
InterPro Scan - TAIR