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13-3821-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 84102 [Map]; Strand: c
      • AT4G00200.1 - [+] show detail - AT hook motif DNA-binding family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 13-3821-1 - 5-prime edge 
    GGTTGGATGA TGAACTCTCT TTTAAAGTTT TGGCTTGCTT GTAATTGCAG 
    TTAAGGATAG GATTTGAGAA TGGAAACAAG CGACAGAATT AGCCCTGGTG 
    GTGGTATAGG AGCAGAAGTT CCATCAGCGT ATCATATGGC TCCGAGACCT 
    TCAGATAGCC CTGCTAACCA GTTTATGGGG TTGTCTCTCC CTCCCATGGA 
    AGCCCCAATG CCTTCTTCAG GGGAAGCCTC AGGGAAGAAG AGGAGAGGCA 
    GACCTCGTAA ATATGAAGCT AATGGTGCTC CTTTGCCTTC TTCATCAGTT 
    CCTCTTGTGA AGAAACGAGT AAGAGGCAAG CTCAATGGTT TTGATATGAA 
    GAAGATGCAT AAGACCATTG GGTTCCATTC TTCTGGTAAA GTTACTCTTC 
    CATTTGTCAC TCTACTTAAC TAAGCATTCC TTTGTCTGTT TGATTATTAA 
    CATTACTTGG TCTTTTGCAT AAAGTTATGA AAGATTATTA ACAACTGTTA 
    AAAGTTTCTC AAGAAGNTGC ATTTGTTTTG TTTAAAGTAG CATATGGGCT 
    TTAACTTTTG TTGAGTGAGT ATCTATTATA ATTGCCTGAA GATTGTAACT 
    TTGAATCATT GTCTTGCAGG TGAAAGGTTT NGTGTTNGTG GNGGTGTTGN 
    TGGTGGTNTT TNATCAATCG GNCGNNAGAN GTTATNATTN NTTAANAAAA 
    GNAANANATA T

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 84218 [Map]; Strand: c
      • AT4G00200.1 - [+] show detail - AT hook motif DNA-binding family protein
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: 13-3821-1 - 3-prime edge 
    ATCCAACCAC ATAGCTTCAT AAATATAGAA ACTTGATTTC GAATTTCAAG 
    TAATCTCAAC AAATGTGGTA ATGATATAAC GCTGAGACTT AATTTTTGTA 
    AAGGCTTCTA CTTTTTCACA GTTAGCTACA GAGTTGGAAG AAGTATAAAG 
    ATGGAATCTT TTGTTCTGTT ACACNTGAAA ATTCTCAAAT TGTACATCAT 
    AATAGTTTGA ACAGGAAAAA AAAACAACAC AAGGAGGTTA GAAGCAAAAG 
    TNCAAAAATA ATGANATCTC ANACAAAAGT GTTTAAAANA AAAACAGAGA 
    CCTGAAGCT

AT4G00200.1

Model type
Protein coding
Short Description
AT hook motif DNA-binding family protein
Computational Description
AT hook motif DNA-binding family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding motif (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: AT-hook motif nuclear-localized protein 1 (TAIR:AT4G12080.1); Has 772 Blast hits to 768 proteins in 34 species: Archae - 0; Bacteria - 6; Metazoa - 13; Fungi - 0; Plants - 749; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR