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13-3823-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19585488 [Map]; Strand: c
      • AT2G47810.1 - [+] show detail - nuclear factor Y, subunit B5
        Distance: -1870; Region: intergenic
      • AT2G47820.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -1649; Region: intergenic
    Flanking Genome Sequence: 13-3823-1 - 5-prime edge 
    ATACTTGAGA GGACATTTCA CAAAGGTGTT ATTTTATCGA CCAACTTTAG 
    GATTTAATAT CTTAAATTTT GTACTATATA GATTTGTATA TTCACGTTCT 
    CATGGTTTCA ACAACTAATT AATACTTTTA TATGTTTTCT CCCTGAAATT 
    CCAGCAAATA CACATATTAT ATACACACAG TTTTTCATTA GTAGTAATTC 
    TTACCTAAGT AACTAAGTAA GGCGCATCAT TAGTTTTTCT ACTAAACATA 
    CTTTTGGTGT AGGATTCGAA AAATAAACTT CCATATGCAA CCATATGACC 
    TAGCTAGTTT CATTATTACA ACCTTAAACC GTTTGAAACC ATTTATGACG 
    AGTCAATTTC ATCTTTTGAT TAGGAGGTAG AGAACCAAGT TAATGAGCAA 
    GTAATACTAA TAATTACTGT TTATAATATA GAAATGCTAT GAACGTCATC 
    ATGCATCGTT CAATAATTAA TTAATATCTA AAGGCGTTCA ACATTTGTTT 
    ATCCGTTTCA AGGTGGTCCG ATCCACCATC GGTCGACACT TGTCCTCACT 
    TTGTTAATGA TTTTACATAT ATGTATATGT AGCTGTAATA TTTAACTAAT 
    GACTTAGGTT TTTCGGGAAA ACAAATAACA TAAAATAATA GCCAACATAT 
    NATACTTNTA NAACACCATG CTCTCCAAAA TCTTGTAAAA TCCTNTATGT 
    ATTTAT

AT2G47810.1

Model type
Protein coding
Short Description
nuclear factor Y, subunit B5
Computational Description
"nuclear factor Y, subunit B5" (NF-YB5); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, intracellular; EXPRESSED IN: sepal, male gametophyte, root, carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Transcription factor, CBFA/NFYB, DNA topoisomerase (InterPro:IPR003957), Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072), Transcription factor, NFYB/HAP3, conserved site (InterPro:IPR003956); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit B3 (TAIR:AT4G14540.1); Has 1476 Blast hits to 1476 proteins in 244 species: Archae - 0; Bacteria - 0; Metazoa - 483; Fungi - 353; Plants - 526; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47820.2

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09040.1).
Link
InterPro Scan - TAIR