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13-3880-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2944584 [Map]; Strand: c
      • AT3G09580.1 - [+] show detail - FAD/NAD(P)-binding oxidoreductase family protein
        Distance: -506; Region: promoter
      • AT3G09585.1 - [+] show detail - pre-tRNA
        Distance: -28; Region: promoter
      • AT3G09590.1 - [+] show detail - CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 ...
        Distance: -369; Region: promoter
    Flanking Genome Sequence: 13-3880-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TTAATAATAT AGTAGAAACA ATGAGCAAAA GTCAATATGT CCGAGGGTTA 
    AGGAGATTGA CTCGAAATCA ATTGGGCTTT GCCCGCGCAG GTTCGAATCC 
    TGCTGTTGAC GGAATTGTTT TTCTTTTTAT CTTTTGTTGG GTTGTGAAAA 
    GTATAACAAC CTTAATAATT TCGTTTTTTT AATCTAAAAA TATACGGTAG 
    TTTTCTCATC ATCACCAATA AGAATTGTTT GATATGAAAC AACAGAATCA 
    GGAAAATTTG TTAAAATGTC AGAAAATGGA AAAATCTCTA ACTGAACAAA 
    AGTAACAAAA AAAACTCCCT TAGAAACAGA GGAATCATGA TGAGAGACAA 
    AATTATACAG AGACGTGGAG ATGTCTGTAA CGTTGTCTCA TCCATCATCA 
    TGTCTTCTTC TTCTCTTCCT TCTCTTTTCC GGTCATCCCT CCGTCCTCGG 
    AACCTCCATC CCCGACNCGG NGAACACGGC GGCNCGTTTG GTAAACAGAG 
    CNAGAAGAGC AAAACTGTCN AGAGAATTTC TACAANCNCN CANCGATGCA 
    CGTGTTNCTT CAGGCGTGCC ANCNCTCGGA TGGGACAGAG ACCCTGGCCC 
    NATNNNCTGA TAAATGGGCC NAACAACGAN GTNCCATTGC NGANTGANAA 
    TNCCGGGTNG GNCTNACNGG NGANACNTTT TNNGCCCNNG GNNTAAAAAA 
    ACTNNTCCCC NNANAANGGG NGAAGACANG GNNGGG

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2944588 [Map]; Strand: c
      • AT3G09580.1 - [+] show detail - FAD/NAD(P)-binding oxidoreductase family protein
        Distance: -510; Region: promoter
      • AT3G09585.1 - [+] show detail - pre-tRNA
        Distance: -24; Region: promoter
      • AT3G09590.1 - [+] show detail - CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 ...
        Distance: -365; Region: promoter
    Flanking Genome Sequence: 13-3880-1 - 5-prime edge 
    GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCAA TTTATATATA TACTCAGATA TTATCAGTAC 
    CAAAATAAAC AAACAAAAAT AAAAGCT

AT3G09580.1

Model type
Protein coding
Short Description
FAD/NAD(P)-binding oxidoreductase family protein
Computational Description
FAD/NAD(P)-binding oxidoreductase family protein; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937); BEST Arabidopsis thaliana protein match is: Flavin containing amine oxidoreductase family (TAIR:AT5G14220.1); Has 2908 Blast hits to 2906 proteins in 704 species: Archae - 36; Bacteria - 1433; Metazoa - 261; Fungi - 51; Plants - 352; Viruses - 0; Other Eukaryotes - 775 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09585.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Ser (anticodon: CGA)
Link
InterPro Scan - TAIR

AT3G09590.1

Model type
Protein coding
Short Description
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein
Computational Description
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related, conserved site (InterPro:IPR018244), Allergen V5/Tpx-1 related (InterPro:IPR001283), Ves allergen (InterPro:IPR002413), SCP-like extracellular (InterPro:IPR014044); BEST Arabidopsis thaliana protein match is: CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (TAIR:AT5G02730.1); Has 3024 Blast hits to 2931 proteins in 377 species: Archae - 0; Bacteria - 64; Metazoa - 1633; Fungi - 327; Plants - 888; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).
Link
InterPro Scan - TAIR