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Mutant Lines
13-3888-1

13-3888-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 5; Position: 1086567 [Map]; Strand: w
- AT5G04020.1 - [+] show detail - calmodulin binding
  Distance: -21; Region: promoter

GNTTAAAAAC TAACAAAATC GGTTATACGA TGGCAACATC GGATTCGACA 
TTCTCTGTTT ACTCTAAAGT TTCTAGCTTT TTGATTGATT GTCACCGCAA 
ATCTCTCTCT GTTTTTTTCT CTTTTTCAAA GACAGAGATG ACCAAAATTC 
ACAAAATTGC AATTCTTCTT ATGTTTCTCT GTGTTCGTCA AAGATCGGAA 
CNTTTTTATT CGTTTTCTTT GTTTTGTTTG ATTCGTGTTT GAACACTCTT 
CGAAGATGAG AAAGTCGCCG TAATTGAATT TTTATTTTTT ATTTTCTTGC 
TGATGTTGAA ATTTATAGCT ACCGTTAGAT TTCGATAATT ATTATTTTCC 
TTTCTTTACT TTTCCTCGAT ACAAATATCA TTTGACCTGT TTTAATAATT 
AGTACAAAAA AAATTCTGTA AAATTTAGGA AATTTTAGTT TACGATAAAG 
AAATGAATTT TGTAACTTAA CTCAAAATTT ATGTCAATTC GTTAATTAAA 
CGTTTGCGTT ATATATATAT AGACATATTA GTATCAGTTT TTGTTGATAG 
AAAAGAAATC TGAAAAGAAA GAGCGTTCAT TGACTAAGAA CATTTAAACG 
ACATTTANTG ATATAGTGAG GCACAAANTA TCTGTCTNTA ATAATTNNCA 
GGCTNAATAC ACATANTAAA TGGAGGGGGG GGAATTAATN GAACAGGGAA 
TGNGGGGGNN AGNCCGCTAA TAANAACTAC GNAANTNATT GNGCGAAAAA 
TCAAGAAAAN TNTTTCAACN NTTTNCGANN ANANANAAAN AT

3 prime edge [+] show sequence

Chromosome: 1; Position: 30346796 [Map]; Strand: w
- AT1G80740.1 - [+] show detail - chromomethylase 1
  Distance: 0; Region: exon20 (CDS)
- AT1G80745.1 - [+] show detail - Transcription factor TFIIIC, tau55-related protein
  Distance: -630; Region: promoter

ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATAGG 
ATACTTGAAT GGCAGCTTGA TTACTGGTTC ATCATCCGTC AGTCCTTGAC 
TCGCCATACC AAAGGCATAT CCTAATGCAA CCCCTACAGG AACTGCCACA 
GCATTCCCAA CCTGGATGTA CCTACAAAAT TTAGATTCAA ACCCAGTTTT 
TACATACATT AGGATCTCCA GTTCAAAAAC AATCATATAC ATAGATAGAA 
AAGCAGCAAG AACCAAGGAC TTACTTTTCC TTAATTGTTC CACAGAGCTT 
GTAACAATCA GGGAACCCCT GTAATCTCGC ATTCTCACGA ACAGACAACA 
CACGGTTTTG CATTGGATGG ATTACACACT GCATCAACCA GTTTTAATAA 
ACCAGCCACT AGAGAATT

AT1G80740.1

Model type: Protein coding
Short Description: chromomethylase 1
Curator Summary: ecotype Kl-0 chromomethylase (CMT1). A plant line expressing an RNAi construct directed against DMT4 has reduced agrobacterium-mediated tumor formation.
Computational Description: chromomethylase 1 (CMT1); FUNCTIONS IN: chromatin binding, DNA binding; INVOLVED IN: DNA mediated transformation, DNA methylation; LOCATED IN: chromatin, nucleus; CONTAINS InterPro DOMAIN/s: Chromo domain subgroup (InterPro:IPR017984), DNA methylase, C-5 cytosine-specific (InterPro:IPR001525), Chromo domain-like (InterPro:IPR016197), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), Chromo domain (InterPro:IPR000953); BEST Arabidopsis thaliana protein match is: chromomethylase 3 (TAIR:AT1G69770.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G80745.1

Model type: Protein coding
Short Description: Transcription factor TFIIIC, tau55-related protein
Computational Description: Transcription factor TFIIIC, tau55-related protein; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIIC, tau55-related (InterPro:IPR019481); BEST Arabidopsis thaliana protein match is: Transcription factor TFIIIC, tau55-related protein (TAIR:AT3G15420.1); Has 31 Blast hits to 31 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G04020.1

Model type: Protein coding
Short Description: calmodulin binding
Computational Description: calmodulin binding; FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Calmodulin-binding protein, plant (InterPro:IPR012417); BEST Arabidopsis thaliana protein match is: Plant calmodulin-binding protein-related (TAIR:AT2G38800.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR