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Mutant Lines
13-3922-1

13-3922-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 2; Position: 19662811 [Map]; Strand: c
  - AT2G48060.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
    Distance: -194; Region: promoter
  - AT2G48070.3 - [+] show detail - resistance to phytophthora 1
    Distance: -6; Region: promoter
  - AT2G48070.1 - [+] show detail - resistance to phytophthora 1
    Distance: -33; Region: promoter
  - AT2G48070.2 - [+] show detail - resistance to phytophthora 1
    Distance: -33; Region: promoter
Flanking Genome Sequence: 13-3922-1 - 5-prime edge
```
CTGCAGAGAG ACCAACTCAT TCTCTCCTCC AATAATCGCG ATAAGGAAGA 
AGAAACTTGT TGGCTTTATT GAACCGGTCC AATTCTCAAC CGAACTCCGG 
TATTCCAAAT TAAAAGCCAG CAATCAATAA TTGAATCTCG AGCCCACGAC 
GGTTTGATTG GTTTAGCCAT TTCTCGGCGC TAAATATAAT TTATTAAAAT 
GATGATTATT GCGAGAAGAA AAGATCTTTC TTTGATTTTT GCTTGTGGAT 
TTGGATTTCC AGTTTCCAAT TCTCTCAAAT TTGCAATCCA CCTTCAAATT 
CACACACATC TTCAACAGCT ACCTTTTCGG GAACTTGCTA GAATT
```
3 prime edge [+] show sequence
1. Chromosome: 2; Position: 19662927 [Map]; Strand: c
  - AT2G48060.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
    Distance: -310; Region: promoter
  - AT2G48070.3 - [+] show detail - resistance to phytophthora 1
    Distance: 0; Region: exon1 (CDS)
  - AT2G48070.1 - [+] show detail - resistance to phytophthora 1
    Distance: 0; Region: exon1 (CDS)
  - AT2G48070.2 - [+] show detail - resistance to phytophthora 1
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: 13-3922-1 - 3-prime edge
```
CTCTGCAGCA CCCATGGGGT CTCCTCTTCC ATAGCTCTCA CTTATGGCTT 
TCGCCATAGA AGAAGATCCA CCTTCCGTAT TTTCGCCACC TCTGACGGAT 
TAGAACCCAA GGACGACCCG CCGGAATCTC CTCTCCCTTC CTCATCCTCT 
GCTCTCGGTA AAGACTTGAA AAAGGTCCGC CTTTTTTCTA TATCATTTAC 
GATTTTTCTG TTGAAACCAT AGGAAGACAT GAAAATGAAA ATGCACCATG 
TTAGATTGGT CTCTAGTGCT TGAACCTGTT GAAAGAGTTG CTCAAGCT
```

AT2G48060.1

Model type: Protein coding
Computational Description: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: shoot, sperm cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341 proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa - 318; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G48070.1

Model type: Protein coding
Short Description: resistance to phytophthora 1
Curator Summary: Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.
Computational Description: RESISTANCE TO PHYTOPHTHORA 1 (RPH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to oomycetes, positive regulation of hydrogen peroxide biosynthetic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 47 Blast hits to 47 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G48070.2

Model type: Protein coding
Short Description: resistance to phytophthora 1
Curator Summary: Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.
Computational Description: RESISTANCE TO PHYTOPHTHORA 1 (RPH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to oomycetes, positive regulation of hydrogen peroxide biosynthetic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 47 Blast hits to 47 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G48070.3

Model type: Protein coding
Short Description: resistance to phytophthora 1
Curator Summary: Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.
Computational Description: RESISTANCE TO PHYTOPHTHORA 1 (RPH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to oomycetes, positive regulation of hydrogen peroxide biosynthetic process; LOCATED IN: plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages.
Link: InterPro Scan - TAIR