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13-3953-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9804707 [Map]; Strand: w
      • AT4G17600.1 - [+] show detail - Chlorophyll A-B binding family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 13-3953-1 - 5-prime edge 
    GACTACATTG TATGATAAGC AATGGCAAGC AGCTTGGAAA AATGATGATG 
    ATGAGTCATT GGGTTCTAAG AAGAAGTGAT AACAAAGATT CTTGCTTTCT 
    TTTTTTGTTG TTGTTGTAAT TAGGAGATGA ACTTACCAAA TGTAATATCA 
    AGAGATTTGA ACAATGTTTC CTCAGATTAT CGTTAATCAT GTCTAGTCTC 
    TACTTAACTT AATCTAATTA GAAAACAAAA AAGGCCCAAT AAGAAGCCCA 
    ATTTTCCAAG TTTATTTTCG TTAGTTATAT TTATCCCACA TCGACAACAG 
    CTCGTAAGTG AGATAAATGT TTTACCAAGA ATCTTTGGCT TTGGCTACCA 
    CGATATTGGC TCTGGCCACA ATTTCTCATT GTTTACCAGG TTGCTTGACC 
    GATACGGGTT TAGGAAACTT GACTCTGAGC AAAGGGAATT TGCTGATGGT 
    GACTTTGTGA GAGGTAAACC TGAGCTTATC CGGAACATAT ATAAACGCAC 
    CAGAGCTCAA ATACTAAACA CTAAANAAGG GAGAGAGCTG CTTAANCAAG 
    TCATGGAGAT GAGGAAACNG AGGAGAGAAA AGATGAANAA AGAGATTACN 
    AAAGCNAAGG AACTANCTGA TCGGTTGCAC CATGTNCATA TTTTGAAACA 
    TACAATGATG TTTCNCGATT TGGAAATTTN TGTNNNGACC AGGCTTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9804591 [Map]; Strand: w
      • AT4G17600.1 - [+] show detail - Chlorophyll A-B binding family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 13-3953-1 - 3-prime edge 
    ATGTAGTCTC ATCAAACAAG TTCTTGAGTT TATCCACATC CTCATTCTTA 
    CGAATAAACA AAACTCCAGC CACAGCCACA AACAATAGTG TCTTGCAGAA 
    GAAATTCCCC ATTTGATCAA CAAGTCCTAC TCCGGTAAGA CTATCGACAA 
    AGTAAGCCAT AAAGAATCCT ATCATCGCCG CACGACCTAC AAAGATTAAG 
    AGTAAGTAAC ATTCTTTGTG TATGTGTTGA TCTTTTGAGA GAGGAAACAA 
    ATACCATTTA AGAGTTCAGC TTCAGGTAAG TGGTATCTCT TAATCCAAGC 
    CCACCATGGA ATAATCGATG TATCGAAAAG CACTGGCTCG TCGTTACTCG 
    TTGTTTCTGG ATTCTCTTCT AGCCATTTTC TTCTCTTTGC CTCTTCAAAT 
    CAAAACACAT TAAACATCAA ATTCAAATTT CGTTTTCACC AACTAACAGA 
    GTAAAAAACT TTAAAACAAA ATCGAGGATC TGATTCTAAT CTAACCAGCA 
    NCGATTACAG AATCCCAATC GGTTTTTCCA TCTTTCTCGA ATTGTGTCAG 
    ATCCCAAGTT CCATTANTCC ACCTCGCATC TTGGAATTTG ATAACACTCT 
    NCGGTTGTTT TCATCTCTTC ACCTTCGACG GCAACATTTT TAGCGGGGGC 
    GGGTTCTTTC CTTTTAACAG CTGGGGTTGA TTGGGGGGGC TCTTTAACTN 
    TCCCTTCCAC GGGCTANGGA GCCTTTNCGG NGACGGC

AT4G17600.1

Model type
Protein coding
Short Description
Chlorophyll A-B binding family protein
Curator Summary
Encodes Lil3:1 (light-harvesting-like) protein. Belongs to the Lhc super-gene family encodes the light-harvesting chlorophyll a/b-binding (LHC) proteins that constitute the antenna system of the photosynthetic apparatus. A generic LHC motif is present in Lil3:1.
Computational Description
LIL3:1; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Chlorophyll A-B binding family protein (TAIR:AT5G47110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR