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13-3964-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 156466 [Map]; Strand: w
      • AT4G00355.3 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 90; Region: intergenic
      • AT4G00356.1 - [+] show detail
        Distance: 108; Region: intergenic
    Flanking Genome Sequence: 13-3964-1 - 5-prime edge 
    TTCACATTCA CCCTATATAC CAACATTTAC ATGATCTTAC ATAAAAGAAA 
    AAAAAATTAT CATGAAATTT TATTCATGTT TAAAGACGAA GATATGATAA 
    AGTATTATAT GGCACGATTG AATAATATAT TGGTAGAACA TTTTTATTTC 
    AATAGTAGAA ACTAAGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 156350 [Map]; Strand: w
      • AT4G00355.2 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon3 (3UTR)
      • AT4G00355.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon3 (3UTR)
      • AT4G00355.4 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon2 (3UTR)
      • AT4G00355.3 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon2 (3UTR)
    Flanking Genome Sequence: 13-3964-1 - 3-prime edge 
    AATGTGAATG TGATTTTTGT TGTTTTCAAA ATTCTCTAAC CAAAATAAAG 
    AGTTTTCAAT TTGACCAACA AAAACATAAC AGGAGACACT GAGTATCTGA 
    TTATGATATA AACAGAGAAA GAGAGTAATA GGGCATTGAG ATAATGAAAT 
    GGGTAAATGA TTGTTTCACA CCAAAGAAAT ATGTACAAAA ACCATGACCT 
    GAAGAGAAGT ACCAAACACA TTCACACACC AGACTTAAAC CATTACATTA 
    CATCCATGTT TTTCGACCCC AAAGAAGCTA CTCTTGTTCT TATCGTCATC 
    ATCAAAGTAA TTCACCTTTT TGTTTTGATT TAACGGTCGT TTTGGGCGCT 
    GGCTCGGATG AATGAATCCC GCCGCTGTCC CCCGACAAAT GCTTGTTTTA 
    GTCGAGAGAT TGGCCCCATC AATCTTCCAG CTTTCTGCAA CCAAAGAGTG 
    TTGTTACATA GTTAAGACTC ACATCATACC ATGGAGGTTC GAAGAATAGT 
    GATCCTAAAC TAAATACCTC GTTTCCAATG CTTGATTCCC ACTTTTGCTG 
    CAAAATCTGC CACCTCTCCT GTTGCCAATG TTGGCCAAGA ATCACAATTC 
    CCATTACAGC TGCGGCTATG CAGATGGACC AAACTGTATT AGTTTCTTTC 
    GCTTGGGCAA TCAAAGAGGC AACGCTTNTT TTCCACCAAG CTACCANCCC 
    GGGCCGNNNA CCNCCNGNCC CTNTN

AT4G00355.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45980.1); Has 100 Blast hits to 97 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00355.2

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45980.1); Has 100 Blast hits to 97 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00355.3

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45980.1); Has 100 Blast hits to 97 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00355.4

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45980.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00356.1

Model type
Pseudogene
Curator Summary
Encodes a defensin-like (DEFL) family protein.
Link
InterPro Scan - TAIR